Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1495 ATGTTTTCCTTCTCCATTTCTGGTTTCCCTCCATTCCCACTCCGCAGGGCATATCCAAGAGTAAGTGCAAGCTTTGGCAGTGACACACCACAGGATCCCAATTCAAGCAGCCCTCATGGCTCGAATGCTAAATTTGATGAAGAATTTCGAAAGGGAAAGGAAAGAGGGAGGGGGATGGGTGGTGGTGATGGGGTTGTTATTGGGAGGAAGAAGAAGTCGAAGGAGAAAGTTCAATGGGTTTGCAGCAATTGTGGGTTCAGTGCAGGGCAATGGTGGGGCGTGTGCCGATCATGCAATGTGTCTGGAACTATGAAAGAGGCCAAATTCAGTAGTGACGCTGATAGTGTGATTAGTGGGTTTTCAGTATTGGAGGATGGTGTAGGGTCTTGGCTACCGCAACAGGAAGGAGAGTTACGTCCCTTGAGATTGGCAGAGGTAAACAAGGGACTTGATCATCACCATTGGAGAATTCCTTTGTCTGGTCCATTTGGAGATGAAGTTTCCAGAGTGCTTGGTGGTGGTCTCGTACCAGGCTCATTGACTTTAATTGGTGGTGATCCTGGTGTTGGGAAGAGTACTCTTTTGCTGCAGATAGCTTCAATTATTGCAGAAGGGCACCATGATGGTGAAGCATCTCCAGTTGTATATGTCTCTGGCGAAGAGAGTGTTGAGCAAATTGGTAACAGAGCAGATCGTCTTAGGATTCAATCAGATATTTATTTATATTCAAGTAATGATGTTGAGGATATATTGAAGAAAGTTCAGCATCTCTCCCCTGGGGCTCTAATTGTTGATTCAATACAAACTGTTTATTTAAAAGGAATAATGGGAAGTCCTGGAGGGATTATGCAGGTGAAAGAATGCACTTCAGCTTTACTCCGATTTGCAAAGAAGACAAGCATCCCGGTTCTTTTGATTGGACATGTGACAAAATCTGGAGACATTGCAGGACCTCGTGTCTTGGAGCATATTGTTGATGTTGTTCTGTATATGGAAGGTGAGAAGTACTCTTCCCATCGTATGCTTCGAGCTGTGAAGAATCGATTTGGATCCACTGATGAGCTTGGAGTTTTTGGGATGTCACATTCAGGACTTCAGGCTATTTCAAATGCCAGTGAAATGTTTCTCAGTGAGCAACACCTGGATTCAGAAATTTTAGCAGGACTAGCTGTTGCTGTAATCATGGATGGGTCCCGGACATTTCTTATTGAAATTCAGGCACTTTGTCTTTCTAGTTCAACAGGTTCAAGACAAGTTAATGGTATCCAACTAAATAGAGCTGATATGATCATATCTGTTCTTATAAAGCAAGCAGGTCTTCGTCTCCGAGAACATGCTGTGTTTTTGAATGTTGTTAGTGGACTGACACTGGCTGAGACTGCTGGAGATCTTGCTATAGCAGCAGCAATTTGCAGCAGTTGCTTGGAAATCCCTATTCCAAATGACATTGCATTCATTGGTGAAATTGGCCTTGGTGGTGAGCTTCGCATGGTTCATAGAATGGATAAAAGGGTATATACGGTTGCAAAATTGGGTTTCAGAATGTGCATAGTACCCAAGGTGGCTGAAAAAGCTTTAGGAAGTGAAGGTTTAGAAAAGATGAAAGTTGTTGGTTGCAGGAATCTGAAAGAGGTTATTAACACTGTATTTCCCAATATAATGTTGAAAAGGAGGTAG 1677 0.4311 MFSFSISGFPPFPLRRAYPRVSASFGSDTPQDPNSSSPHGSNAKFDEEFRKGKERGRGMGGGDGVVIGRKKKSKEKVQWVCSNCGFSAGQWWGVCRSCNVSGTMKEAKFSSDADSVISGFSVLEDGVGSWLPQQEGELRPLRLAEVNKGLDHHHWRIPLSGPFGDEVSRVLGGGLVPGSLTLIGGDPGVGKSTLLLQIASIIAEGHHDGEASPVVYVSGEESVEQIGNRADRLRIQSDIYLYSSNDVEDILKKVQHLSPGALIVDSIQTVYLKGIMGSPGGIMQVKECTSALLRFAKKTSIPVLLIGHVTKSGDIAGPRVLEHIVDVVLYMEGEKYSSHRMLRAVKNRFGSTDELGVFGMSHSGLQAISNASEMFLSEQHLDSEILAGLAVAVIMDGSRTFLIEIQALCLSSSTGSRQVNGIQLNRADMIISVLIKQAGLRLREHAVFLNVVSGLTLAETAGDLAIAAAICSSCLEIPIPNDIAFIGEIGLGGELRMVHRMDKRVYTVAKLGFRMCIVPKVAEKALGSEGLEKMKVVGCRNLKEVINTVFPNIMLKRR* 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1495 558 Pfam Rubredoxin metal binding domain 79 106 IPR041166 -
Pvu10g1495 558 PRINTS DNA repair protein radA signature 81 105 - -
Pvu10g1495 558 PRINTS DNA repair protein radA signature 169 197 - -
Pvu10g1495 558 PRINTS DNA repair protein radA signature 265 289 - -
Pvu10g1495 558 PRINTS DNA repair protein radA signature 304 332 - -
Pvu10g1495 558 PRINTS DNA repair protein radA signature 339 365 - -
Pvu10g1495 558 PRINTS DNA repair protein radA signature 414 437 - -
Pvu10g1495 558 ProSiteProfiles RecA family profile 1. 156 309 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Pvu10g1495 558 PANTHER DNA REPAIR PROTEIN RADA 61 550 - -
Pvu10g1495 558 SUPERFAMILY Ribosomal protein S5 domain 2-like 346 550 IPR020568 -
Pvu10g1495 558 Gene3D - 165 358 IPR027417 -
Pvu10g1495 558 SMART AAA_5 177 335 IPR003593 -
Pvu10g1495 558 MobiDBLite consensus disorder prediction 24 42 - -
Pvu10g1495 558 Pfam AAA domain 170 313 - -
Pvu10g1495 558 MobiDBLite consensus disorder prediction 43 58 - -
Pvu10g1495 558 TIGRFAM sms: DNA repair protein RadA 74 544 IPR004504 GO:0003684|GO:0005524|GO:0006281
Pvu10g1495 558 Pfam Subunit ChlI of Mg-chelatase 431 520 - -
Pvu10g1495 558 Gene3D - 385 557 IPR014721 -
Pvu10g1495 558 PANTHER DNA REPAIR-LIKE PROTEINRADA 61 550 - -
Pvu10g1495 558 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 167 360 IPR027417 -
Pvu10g1495 558 MobiDBLite consensus disorder prediction 23 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1495 Pvu-Chr10 41534859 41542937 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1495 K04485 - gmx:100794165 947.962
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g1495 10 41534859 41542937 Pvu10g1495 10 41534859 41542937 ECH
Pvu5g1702 5 39019423 39028096 Pvu10g1495 10 41534859 41542937 PCT