Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1648 ATGTGCTTCAAGCTCAAAATGTGGAACCTGCTGCTGCTTCTTGTTTCTTCTCTCATTGCTTCTGCTGAGGCCTCAGTGTCCTATGACTCAAAGGCTATCACCATTAATGGCCAGAGAAGGATCCTCATTTCTGGATCCATTCATTACCCAAGGAGCACCCCTGAGATGTGGCCAGATCTTATTCAGAAGGCCAAGGAGGGAGGGTTGGATGTTATTCAGACTTATGTTTTCTGGAACGGGCACGAGCCTTCACCTGGCCAGTATTATTTTGAGGGGAACTATGATCTGGTGAAGTTCATAAAGCTGGTGCAGCAAGCGGGCCTTTATGTTAATCTCAGGATTGGCCCTTATGTCTGTGCTGAGTGGAACTTTGGGGGTTTCCCTGTTTGGCTAAAGTACATTCCAGGAATCAGCTTCAGAACAGACAATGAACCTTTTAAGTATCAAATGCAAAAATTTACCACCAAGATTGTTGATTTGATGAAAGCAGAGAGGTTATATGAGACTCAGGGAGGTCCAATAATTATGTCCCAGATTGAAAATGAATATGGACCTATAGAGTATGAAATTGGTGGTGCTGGTAAAGCTTATACTAATTGGGCAGCAGATATGGCTATGGCACTTGGTACTGGGGTTCCATGGATCATGTGCAAGCAAGATGACACTCCTGATCCTCTTATTAACACTTGCAATGGCTTCTACTGTGATTATTTCTCTCCAAATAAGGCTTACAAGCCAAAGATGTGGACAGAAGCTTGGACTGGCTGGTTTACTGAGTTTGGAGGTCCGGTTCCTCATCGACCTGCTGAAGACTTGGCATTTTCAGTTGCAAGGTTTCTACAGAAAGGAGGATCATTCATAAACTATTACATGTATCATGGGGGAACAAACTTCGGTCGAACTGCTGGTGGTCCCTTTATTGCAACAAGCTATGATTATGATGCACCACTTGATGAATATGGTTTGCTCAGGCAACCAAAGTGGGGTCATCTGAAGGATTTACACAGAGCAATAAAACTGTGTGAACCAGCCTTAGTATCGGGAGATCCTACCGTAACAAAGATTGGAAACTATCAAGAGGCTCATGTGTTTAAATCAAAGTTGGGAGCTTGTGCTGCATTCCTTGCAAACTATAACCCAAAATCTTATGCAACAGTGGCATTTGGAAGTATGCATTACAACTTGCCTCCTTGGTCTATAAGCATTCTTCCTGACTGCAAGCACACTATTTATAACACTGCAAGGGTTGGTTCTCAGAGTGCCCAGATGAAGATGACTGCTGTTCCTATTCATGGCGGACTCTCTTGGCTATCATTCAATGAAGAAACGACTACTACTGATGATAGTTCCTTCACCATGACTGGCCTGTTAGAGCAGTTAAATACAACAAGAGATTTATCTGACTACTTGTGGTACTCTACAGATGTTGTGCTTGATCCCAATGAAGGATTTCTGATAAACGGAAAGGAACCTGTTCTTACTGTGTTTTCTGCTGGGCATGCTTTGCATGTTTTTATAAATGGTCAACTATCAGGAACTTCATACGGAAGCTTAAATTTTCCTAAACTAACATTTAGTGAAGGAGTGAAGCTCAGAGCCGGTGTTAACAAGATCTCTCTTCTAAGTGTTGCAGTTGGACTCCCGAATGTTGGTCCTCATTTCGAAACATGGAATGCCGGTGTTCTTGGCCCAATTTCATTAAGTGGTCTCAACGAAGGGAGAAGGGACTTGTCTTGGCAGAAATGGTCTTACAAGGTTGGTCTTAAAGGTGAAACCTTGAGTCTTCACTCTCTTAGTGGAAGTTCCTCAGTGGAGTGGATTCAGGGATCTTTAGTTTCTAGAAGACAGCCTTTGACTTGGTACAAAACAACTTTCGATGCGCCGGCTGGGACTGCACCATTGGCTTTAGACATGGACAGCATGGGTAAAGGTCAAGTGTGGTTAAATGGACAGAATCTTGGCCGCTTCTGGCCTGCTTATAAAGCTGCCGGTGCCTGTGATCATTGTGACTATGCTGGAACTTATAATGAGAATAAATGCAGAAGTAATTGTGGCGAGGCCTCTCAAAGATGGTATCATGTTCCTCAGTCATGGCTAAAGCCTACAGGAAATTTATTGGTTGTGTTTGAAGAACTAGGTGGAGATCCCAATGGAATCTTTTTGGTTAGAAGGGATATAGATAGTGTGTGTGCTGATATCTATGAGTGGCAGCCTAACCTTATAAGCTATCAGATGCAAGTTGCTGGCAAACCACCTGTGAGACCAAAAGTTCATTTAACATGTAGCCCTGGACAGAAAATCTCATCAATCAAATTTGCCAGCTTTGGTACTCCAGTAGGTTCTTGTGGAAACTTCCATGAAGGAAGCTGTCATGCTCACAAGTCTTATGATGCCTTTGAAAGGAATTGTGTTGGACAAAACTGGTGCACAGTAACAGTATCACCTGAAAATTTTGGAGGAGATCCATGCCCAAATGTCATGAAGAAACTCTCAGTAGAAGCCATTTGTACCTGA 2514 0.43 MCFKLKMWNLLLLLVSSLIASAEASVSYDSKAITINGQRRILISGSIHYPRSTPEMWPDLIQKAKEGGLDVIQTYVFWNGHEPSPGQYYFEGNYDLVKFIKLVQQAGLYVNLRIGPYVCAEWNFGGFPVWLKYIPGISFRTDNEPFKYQMQKFTTKIVDLMKAERLYETQGGPIIMSQIENEYGPIEYEIGGAGKAYTNWAADMAMALGTGVPWIMCKQDDTPDPLINTCNGFYCDYFSPNKAYKPKMWTEAWTGWFTEFGGPVPHRPAEDLAFSVARFLQKGGSFINYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLLRQPKWGHLKDLHRAIKLCEPALVSGDPTVTKIGNYQEAHVFKSKLGACAAFLANYNPKSYATVAFGSMHYNLPPWSISILPDCKHTIYNTARVGSQSAQMKMTAVPIHGGLSWLSFNEETTTTDDSSFTMTGLLEQLNTTRDLSDYLWYSTDVVLDPNEGFLINGKEPVLTVFSAGHALHVFINGQLSGTSYGSLNFPKLTFSEGVKLRAGVNKISLLSVAVGLPNVGPHFETWNAGVLGPISLSGLNEGRRDLSWQKWSYKVGLKGETLSLHSLSGSSSVEWIQGSLVSRRQPLTWYKTTFDAPAGTAPLALDMDSMGKGQVWLNGQNLGRFWPAYKAAGACDHCDYAGTYNENKCRSNCGEASQRWYHVPQSWLKPTGNLLVVFEELGGDPNGIFLVRRDIDSVCADIYEWQPNLISYQMQVAGKPPVRPKVHLTCSPGQKISSIKFASFGTPVGSCGNFHEGSCHAHKSYDAFERNCVGQNWCTVTVSPENFGGDPCPNVMKKLSVEAICT* 838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1648 837 Gene3D Glycosidases 18 289 - -
Pvu5g1648 837 PANTHER BETA-GALACTOSIDASE RELATED 10 831 IPR001944 GO:0004553|GO:0005975
Pvu5g1648 837 SUPERFAMILY Galactose-binding domain-like 400 571 IPR008979 -
Pvu5g1648 837 Pfam Galactose binding lectin domain 759 836 IPR000922 GO:0030246
Pvu5g1648 837 Pfam Beta-sandwich domain in beta galactosidase 345 416 IPR041392 -
Pvu5g1648 837 Gene3D - 591 730 - -
Pvu5g1648 837 SUPERFAMILY Galactose-binding domain-like 580 742 IPR008979 -
Pvu5g1648 837 Gene3D - 290 414 - -
Pvu5g1648 837 Pfam Glycosyl hydrolases family 35 33 337 IPR031330 -
Pvu5g1648 837 Gene3D - 753 837 IPR043159 -
Pvu5g1648 837 ProSiteProfiles SUEL-type lectin domain profile. 751 837 IPR000922 GO:0030246
Pvu5g1648 837 PANTHER BETA-GALACTOSIDASE 10 831 - -
Pvu5g1648 837 SUPERFAMILY (Trans)glycosidases 26 342 IPR017853 -
Pvu5g1648 837 PRINTS Glycosyl hydrolase family 35 signature 36 53 IPR001944 GO:0004553|GO:0005975
Pvu5g1648 837 PRINTS Glycosyl hydrolase family 35 signature 57 75 IPR001944 GO:0004553|GO:0005975
Pvu5g1648 837 PRINTS Glycosyl hydrolase family 35 signature 112 131 IPR001944 GO:0004553|GO:0005975
Pvu5g1648 837 PRINTS Glycosyl hydrolase family 35 signature 169 184 IPR001944 GO:0004553|GO:0005975
Pvu5g1648 837 PRINTS Glycosyl hydrolase family 35 signature 248 263 IPR001944 GO:0004553|GO:0005975
Pvu5g1648 837 PRINTS Glycosyl hydrolase family 35 signature 285 300 IPR001944 GO:0004553|GO:0005975
Pvu5g1648 837 PRINTS Glycosyl hydrolase family 35 signature 305 321 IPR001944 GO:0004553|GO:0005975
Pvu5g1648 837 PRINTS Glycosyl hydrolase family 35 signature 616 630 IPR001944 GO:0004553|GO:0005975
Pvu5g1648 837 PRINTS Glycosyl hydrolase family 35 signature 643 659 IPR001944 GO:0004553|GO:0005975
Pvu5g1648 837 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 171 183 IPR019801 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1648 Pvu-Chr5 38540635 38546658 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1648 12 837 Glycoside Hydrolase AT3G13750 79.348 0.0 1413
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1648 - - gmx:100811187 1668.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1648 5 38540635 38546658 Pvu5g1648 5 38540635 38546658 ECH
Pvu5g1648 5 38540635 38546658 Pvu10g1446 10 41137349 41143470 PCT