Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1644 TATGACAAATGTTGTTCCACTCAGCTTATTGATGGAGATGGTACAATCAATGTTTCTGGAATCGAAAGCTTCATGAAAGAGGTTAAATTAGGTGAATGTGGGCTTTCCTATGCCGTAGTTTCTATAATGGGTCCTCAAAGTAGTGGCAAGAGCACACTCTTGAACAATTTGTTTAGTACCAACTTCAGAGAGATGGATGCATTTAAGGGAAGGTCTCAAACCACCAAAGGAATTTGGATGGCTAAATGTGTTGGCATAGAGCCTTGTACACTTGTGATGGATTTGGAGGGTACAGATGGAAGAGAACGTGGAGAGGATGACACTGCATTTGAAAAGCAAAGTGCTTTATTTGCTTTGGCTATTTCTGACATAGTGCTAATAAACATGTGGTGCCATGACATTGGCCGCGAACAAGCTGCAAATAAGCCTCTTTTGAAAACTGTGTTTCAGGTCATGATGAGATTGTTTAGTCCACGCAAAACAACATTGCTGTTTGTCATACGTGACAAGACAAAGACACCGCTTGAAAATTTAGAGCCTGTTTTGCGAGAAGATATTCAGAAGATATGGGACTCTGTTCCTAAACCAGAGGCCCATAAGGAAACCCCATTAAGTGATTTTTTCATTGTTGAAGTTGTTGCTCTTTCTAGTTTCGAAGAAAAGGAAGATCTATTCAAGGAGCAGGTTGTCAATTTGAGGAATCGATTCCAGCATTCTATTGCTCCAGGTGGCCTTGCAGGGGATCGGCGTGGAGTAGTTCCTGCTTCTGGCTTTTCTTTTAGTGCTCAGGAAATCTGGAAAATCATTAAGGAGAATAAGGATCTTGACCTTCCTGCACACAAGGTCATGGTTGCTACTGTACGATGTGAAGAAATTGCTAATGAGAAGCATGACCTTTTTGCTTCAAATAAGGACTGGTGTGAGTTGAAAGAGGCTGTGCAATCTGGCCCTATTTCTGGTTTTGGGAAAAATCTCAATTCACTCCTTACCACTTGTCTTTCAGAATATGATGCTGAAGCCAATTATTTTGACGAAGGTGTCAGATCGGCAAAACAAAAGCAACTTCAAGAAAAGCTGTTGCAACTTGTGCAACCAGCATTCCAAGCAGCACTGGGACATGTAAGGTCCAGAGTTTTCGACAAGTTCAAGGAAGCATTTGACAAGGCTTTGAATGGAGGGGAAGGGTTTTCTTCTGCTGCTAATACATGCGTAGAGTCTTGTATGACTAGGTTTGATGAAGGATTTGCAGATGTTGTCATTGAAGTAGCAAACTGGGATGCATCTAAAGTGAGGGAGAAGCTACGGCGTGATGTTGATACACATGTCTCATCTGTCCGAGCAACTAAGATGTCAGAACTAGTTTCATCATACGAGGAAAAACTGAAGGAGGCATTGTCTGCACCTGCTGAAACTCTATTGGATGGAGCTAGTAAAGATACTTGGCCCTCGATAAGGAAACTCCTTAATATTGAGACTCAATCAGCTGTTTCTGGGTTCTCTGCTGAACTTGCCAGATATGATACGGAAGAAGAAACAAAAAAGAGCATGATTATGGCTTTAGAGGATTATGCAAAGGGTATGATAGAAGCCAAGGCCAGGGAAGAGGCTGGCAGAGTTCTAATCCGTATGAAGGACAGGTTTTTGACATTGTTTAGTCATGATTCTGATTCAATGCCTCGGATTTGGACGGGTAAAGAAGATATTCGAGCCATCACAAAGTCTTCCCGCTCTGAATGCTTGAAGTTGCTGTCTGTAATGGCTGTAATTCGTTTGGCTGATGCTGATGACATTTATGATATAGAGAAAACTTTAACAGTCGCATTGGCAGATTCATCAAGCGATTCTGGTAAAGATAACAGCATCACAACACTCGATCCACTGGCTTCGAGCACTTGGGACCAGGTACCAACCTCTAAAACATTGATCACACCTGTCCAGTGCAAATCATTATGGAGGAAATTCAAGATGGAGACAGAATATACTGTCTCTCAGGCCATTTCTGCACAGGAAGCCAACAATCGTAGCAACAACTGGTTACCTCCACCATGGGCTATTGTTGCTTTGCTTATTCTTGGATTTAATGAATTTATGACAGTTTTAAGAAATCCCTTGTATTTAGGTGTCATCTTTGTTGGCTATCTTTTCATGAAATCCCTATGGGTGCAGCTAGACATTGCAGGAGAATTTCAAAATGGAGCTCTTCCAGGAATCATCTCCTTGTCTAGCAAGTTTGTTCCAACTATCATGAACCTTATGAAAAAACTAGCAGAGGAGGGACAGGGCACTGCAGGCAATGATGATAGTAGAAATTCATCAAAAAGCTATGAAAGGCCTGTTCCTTCTGGTAGAGTTACATCATCTAGAGCTTCTTCTGGTGTGACTTCTTTGGGCAATAGAACGGACTCAACCGAGTATACCAGTCCATTAAAAGACGAGTAG 2439 0.4182 YDKCCSTQLIDGDGTINVSGIESFMKEVKLGECGLSYAVVSIMGPQSSGKSTLLNNLFSTNFREMDAFKGRSQTTKGIWMAKCVGIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALAISDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLENLEPVLREDIQKIWDSVPKPEAHKETPLSDFFIVEVVALSSFEEKEDLFKEQVVNLRNRFQHSIAPGGLAGDRRGVVPASGFSFSAQEIWKIIKENKDLDLPAHKVMVATVRCEEIANEKHDLFASNKDWCELKEAVQSGPISGFGKNLNSLLTTCLSEYDAEANYFDEGVRSAKQKQLQEKLLQLVQPAFQAALGHVRSRVFDKFKEAFDKALNGGEGFSSAANTCVESCMTRFDEGFADVVIEVANWDASKVREKLRRDVDTHVSSVRATKMSELVSSYEEKLKEALSAPAETLLDGASKDTWPSIRKLLNIETQSAVSGFSAELARYDTEEETKKSMIMALEDYAKGMIEAKAREEAGRVLIRMKDRFLTLFSHDSDSMPRIWTGKEDIRAITKSSRSECLKLLSVMAVIRLADADDIYDIEKTLTVALADSSSDSGKDNSITTLDPLASSTWDQVPTSKTLITPVQCKSLWRKFKMETEYTVSQAISAQEANNRSNNWLPPPWAIVALLILGFNEFMTVLRNPLYLGVIFVGYLFMKSLWVQLDIAGEFQNGALPGIISLSSKFVPTIMNLMKKLAEEGQGTAGNDDSRNSSKSYERPVPSGRVTSSRASSGVTSLGNRTDSTEYTSPLKDE* 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1644 812 CDD GBP 33 239 - -
Pvu5g1644 812 PANTHER PROTEIN SEY1 4 772 IPR008803 -
Pvu5g1644 812 Pfam Root hair defective 3 GTP-binding protein (RHD3) GTPase domain 43 278 - -
Pvu5g1644 812 ProSiteProfiles GB1/RHD3-type guanine nucleotide-binding (G) domain profile. 34 249 IPR030386 GO:0005525
Pvu5g1644 812 MobiDBLite consensus disorder prediction 763 804 - -
Pvu5g1644 812 PANTHER PROTEIN ROOT HAIR DEFECTIVE 3 HOMOLOG 4 772 - -
Pvu5g1644 812 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 244 IPR027417 -
Pvu5g1644 812 Pfam Sey1 three-helix bundle domain 320 758 IPR046758 -
Pvu5g1644 812 Hamap Protein SEY1 [SEY1]. 6 760 IPR008803 -
Pvu5g1644 812 Coils Coil 215 235 - -
Pvu5g1644 812 MobiDBLite consensus disorder prediction 759 812 - -
Pvu5g1644 812 Gene3D - 12 242 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1644 Pvu-Chr5 38513623 38521290 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1644 K22698 - gmx:100797516 1374.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1644 5 38513623 38521290 Pvu10g1444 10 41110863 41121113 PCT