Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1444 ATGGCAAATAGTGAGTCTTGTTGTTCAACTCAGCTTATTGATGGAGATGGTACATTCAATATTTCTGGGGTTGAAAGCTTTATGAAGGAGGTGAAGTTGGCTGAATGTGGGCTTTCGTATGCTGTAGTTTCTATAATGGGTCCACAAAGCAGTGGCAAGAGCACACTATTAAATAATTTGTTCCGTACCAACTTCAGAGAGATGGATGCTTTCAAGGGAAGGTCTCAAACAACCAAAGGAATCTGGATGGCTAAATGCACCGGCATAGAGCCTTGTACACTTGTTATGGATTTGGAGGGTACTGATGGAAGAGAACGCGGAGAGGATGACACTGCTTTTGAAAAGCAGAGTGCTCTATTTGCTCTTGCTGTATCAGATATTGTGTTAATAAACATGTGGTGCCATGACATTGGCCGTGAGCAAGCTGCAAATAAGCCACTGTTGAAAACTGTCTTTCAAGTCATGATGAGATTGTTTAGTCCACGAAAAACAACACTGTTGTTTGTCATACGGGATAAAACAAGGACGCCACTTGAAAATTTAGAACCTGTTTTGCGGGAAGATATTCAGAAGATATGGGACTCTGTTCCTAAACCACAGGCCCACAAGGAAACCCCATTAAGTGAATTTTTCAACGTTGAAGTTGTTGCACTTTCTAGTTATGAAGAAAAGGAAGAGCAATTTAAAGAGCAGGTTGCCAGTTTGCGGCAACGATTCCAGCATTCCATTGCTCCTGGTGGGCTTGCAGGGGATCGGCGGGGAGTAGTTCCTGCTTCTGGTTTTTCATTTAGTTCTGAGCATATATGGAAAGTCATTAAGGAGAACAAAGATCTCGACCTTCCTGCACATAAGGTTATGGTTGCTACTGTACGATGTGAAGAAATCACCAATGAGAAATATACCTCTTTTGCAGCACATGAGGATTGGTGTCAACTGGAAGAGGCTGTCCAATCTGGCCCTGTTCCTGGATTTGGGAGAAAGCTCAGTTCACTGCTTGGTACTTGTTTATCAGAGTATGATGCTGAAGCCACCTATTTTGATGAAGGTGTGAGATCTTCCAAACAAAAGCAACTCCAAGAAAAATTGTTCCAACTTGTCCAACCAGCATTCCAATCTGCGTTGGGACATATAAGATCTGGCACTTTGGATAAATTCAAGGTGGCATTTGACAAGGCTCTGAATGGAGGGGAAGGGTTTTCTGTGGCTGCTAATAATTGCAGTGCGTCTTGTATGGTTCAATTTGATGAAGCATGTGTAGATATTGTTATTGAACAAACAAACTGGGATACATCTAAAGTGCGAGATAAATTGCTGCGGGATATTGAAGCACATGTTGCAACTGTGCGTGCAGCCAAGATTTCTGAACTTACTTCATCATATGAGGAAAAACTTAAACACGCTTTGTCTGGACCTGTCGAAGCTCTTTTGGACGGAGCTAGTAGTGATACTTGGTCATCAATAAGGAACCTTCTTACGCGTGAGACTGTATCAGCTGTTTCAGGGTTCTCTGCTGCACTTACTGGGTTTGATATGGATGAAGAAACAAGACTGAAAATGCTTAAAAGTTTAGAGGATTATGCAAGAGGTCTGGTAGAAGGAAAGGCCAGAGAAGAAGTAGGAAGAGTTCTAATCCGCATGAAGGACAGGTTTACAATGTTGTTTAGTCATGATGCTGATTCAATGCCTCGTGTTTGGACTGGTAAAGAAGATATACGAGCCATCACCAAGACTGCTCGATCTGCTTCATTGAAGTTGCTATCTGTAATGGCTGCAATTCGTTTGGATGATGATGACTCTGACAATATTGAGAAAGTGTTAGCAGTTGCTTTGGTGGAACCATCACCAAGTAGTAATGGTACAAGGAGCATGACAACGGTTGATCCACTAGCTTCTAGTAGCTGGGAAGAGGTTTCATCCTCTAAAACATTGATTACGCCTGTCCAGTGCAAGTCTTTGTGGAGGCAATTCAAGACAGAGACAGAGTACAGTGTCTCTCAAGCCATTTCTGCACAGGAAGCAAACAAGCGCAACAACAACTGGTTACCCCCCCCTTGGGCGATAGCTGCTTTGGTTATCCTAGGATTTAATGAATTTATGACACTTCTAAGAAATCCCTTGTATTTGGGTGTCATCTTTGTTGGTTATCTTCTTGCTAAAGCCCTGTGGGTGCAGCTTGACATTTCGGGTGAATTTCGCAACGGAGCTCTTCCGGCAATCATATCCTTGTCTACCAAGTTTGTTCCAACCATCATGAACCTTATGAAAAAACTAGCAGAGGAGGGACAAAACCATGCAACTAACAATCCTCAGAGATCCCCAACAAAAAACAGTTACAATGAGACTCACGGCGTCTCGTCGAGCACGTCATCTAACCTGACTGCATTGGACAACGGAACCGAGTATGCCAGTCCAGTTAAAGATGAGTAG 2427 0.4289 MANSESCCSTQLIDGDGTFNISGVESFMKEVKLAECGLSYAVVSIMGPQSSGKSTLLNNLFRTNFREMDAFKGRSQTTKGIWMAKCTGIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHKETPLSEFFNVEVVALSSYEEKEEQFKEQVASLRQRFQHSIAPGGLAGDRRGVVPASGFSFSSEHIWKVIKENKDLDLPAHKVMVATVRCEEITNEKYTSFAAHEDWCQLEEAVQSGPVPGFGRKLSSLLGTCLSEYDAEATYFDEGVRSSKQKQLQEKLFQLVQPAFQSALGHIRSGTLDKFKVAFDKALNGGEGFSVAANNCSASCMVQFDEACVDIVIEQTNWDTSKVRDKLLRDIEAHVATVRAAKISELTSSYEEKLKHALSGPVEALLDGASSDTWSSIRNLLTRETVSAVSGFSAALTGFDMDEETRLKMLKSLEDYARGLVEGKAREEVGRVLIRMKDRFTMLFSHDADSMPRVWTGKEDIRAITKTARSASLKLLSVMAAIRLDDDDSDNIEKVLAVALVEPSPSSNGTRSMTTVDPLASSSWEEVSSSKTLITPVQCKSLWRQFKTETEYSVSQAISAQEANKRNNNWLPPPWAIAALVILGFNEFMTLLRNPLYLGVIFVGYLLAKALWVQLDISGEFRNGALPAIISLSTKFVPTIMNLMKKLAEEGQNHATNNPQRSPTKNSYNETHGVSSSTSSNLTALDNGTEYASPVKDE* 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1444 808 Pfam Sey1 three-helix bundle domain 323 760 IPR046758 -
Pvu10g1444 808 Coils Coil 218 238 - -
Pvu10g1444 808 MobiDBLite consensus disorder prediction 763 808 - -
Pvu10g1444 808 MobiDBLite consensus disorder prediction 763 798 - -
Pvu10g1444 808 PANTHER PROTEIN SEY1 3 804 IPR008803 -
Pvu10g1444 808 ProSiteProfiles GB1/RHD3-type guanine nucleotide-binding (G) domain profile. 37 252 IPR030386 GO:0005525
Pvu10g1444 808 CDD GBP 36 242 - -
Pvu10g1444 808 PANTHER PROTEIN ROOT HAIR DEFECTIVE 3 HOMOLOG 3 804 - -
Pvu10g1444 808 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 276 IPR027417 -
Pvu10g1444 808 Pfam Root hair defective 3 GTP-binding protein (RHD3) GTPase domain 46 281 - -
Pvu10g1444 808 Gene3D - 15 245 IPR027417 -
Pvu10g1444 808 Hamap Protein SEY1 [SEY1]. 9 765 IPR008803 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1444 Pvu-Chr10 41110863 41121113 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1444 K22698 - gmx:100777656 1467.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1644 5 38513623 38521290 Pvu10g1444 10 41110863 41121113 PCT