Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1642 ATGGCTTCCATTGGTGCACTCAAATTCTTGCTTTTCTTACTCCTATGCCTCCTCAACTATCCACCTCTTTCTCAAGGAAAGAAGAACTGGTATGAAGGGTACCCATTTATCAGGAGAGGAAGGTCAGTGGAGGGTTTAAGGAATGGAGGGTATGACTATATAATTGTGGGAGGGGGCACTGCAGGGTGTCCATTGGCTGCAACTCTGTCTGAGAAATTCAAAGTTCTGGTGCTTGAAAGAGGAGGAGTCCCTTTCAACAACCCTAATGTCACATTTCTGCAGAACTTTCACATTACTTTGGCAGACACTTCTCCAACTTCGGCTTCTCAGTACTTCATTTCAACAGATGGAGTGCTCAATGCAAGGGGAAGGGTTTTGGGAGGTGGCAGTTCCATTAACGCCGGCTTCTACACTCGTGCTAGCCCTAGATTTATAAGGAAGGTGGGGTGGGATACAAAGCTGGTGAATGAGTCTTATCCTTGGGTGGAGAAGCAGGTTGTTCACCGTCCAAAGTTTTCAGATTGGCAGAGAGCAGTGAGGGATGGGCTTCTAGATGCTGGTGTGTCTCCTTTTAATGGATTCACCTATGATCATAAGTATGGAACCAAAGTTGGTGGAACCATTTTTGACAGATTTGGCCGTCGCCACACTGCTGCTGAATTGCTTGCTACTGGGAACCCTCAGAAACTCACTGTCCTCGTCCATGCCACTGTCCAAAAGATTGTTTTTGATACAACAGGAAAAAAACCAAAAGCTATTGGGGTTATTTTCAAGGATGAAAATGGAAAGCAGCATGAGGCATTTCTGGGAAGTGGGAGGCAGAGTGAGGTGATTGTGTCTAGTGGGGCAATTGGCACTCCTCAATTGCTAATGCTCAGTGGAATTGGCCCCAAAGAAGAGCTTCAGAAATTCAACATCCCTGTTGTGCTAGACAATGAATTTGTTGGTAAAGGCATGGCAGATAATCCCATGAACACCATTTTTGTTCCTTCCAAGAGACCAGTTCAGCAGTCACTCATAGAAACTGTGGGTATAACCAATCTGGGTGTGTACATTGAGACTAGTTGTGGCTTTGGGCAGTCCAAAGACAGCATTCACTGCCACCATGGTATCTTGTCAGCTGAGATTGGGCAGTTGTCTACAATTCCACCAAAGCAAAGATCACGAGAAGCTGTTGAGGCTTTTGTGAAGAGCAAGAAAGACATACCAATTGAAGCATTCAAGGGAGGGTTCATATTGTCAAAAGTTGCCAGTCCTTGGTCAACAGGTGAACTGAGATTGATAAACACTAACGTGGAAGACAACCCTGCTGTTACCTTCAACTATTTCAGTCACCCTTATGATCTTAAGCGCTGCGTGGAGGGTATCCGCTTGGCCATAAAGGTCGTTCAGTCACAGCACGTCTCAAACTACACCATTTGTGACAGAGAAACCGCAGAGAAAATGTTGAACATCAGTGTGCAGGCTAATATCAACCTCATACCCAAACACCCCAATGACACAAAGTCACTAGAACAGTTTTGTAGAGACTCTGTGATCACTATTTGGCACTACCATGGTGGGTGCCATGTGGGGAAAGTGGTAGACTCTGAGCATAAGGTTCTTGGTGTTGACAGACTCCGTGTGGTAGATGGCTCCACATTTAGTGAGTCACCAGGAACCAATCCTCAAGCCACTGTGATGATGATGGGAAGGTACATGGGACTGAAGATTCTAAGAGACAGGTTGGGGAAATAG 1737 0.4565 MASIGALKFLLFLLLCLLNYPPLSQGKKNWYEGYPFIRRGRSVEGLRNGGYDYIIVGGGTAGCPLAATLSEKFKVLVLERGGVPFNNPNVTFLQNFHITLADTSPTSASQYFISTDGVLNARGRVLGGGSSINAGFYTRASPRFIRKVGWDTKLVNESYPWVEKQVVHRPKFSDWQRAVRDGLLDAGVSPFNGFTYDHKYGTKVGGTIFDRFGRRHTAAELLATGNPQKLTVLVHATVQKIVFDTTGKKPKAIGVIFKDENGKQHEAFLGSGRQSEVIVSSGAIGTPQLLMLSGIGPKEELQKFNIPVVLDNEFVGKGMADNPMNTIFVPSKRPVQQSLIETVGITNLGVYIETSCGFGQSKDSIHCHHGILSAEIGQLSTIPPKQRSREAVEAFVKSKKDIPIEAFKGGFILSKVASPWSTGELRLINTNVEDNPAVTFNYFSHPYDLKRCVEGIRLAIKVVQSQHVSNYTICDRETAEKMLNISVQANINLIPKHPNDTKSLEQFCRDSVITIWHYHGGCHVGKVVDSEHKVLGVDRLRVVDGSTFSESPGTNPQATVMMMGRYMGLKILRDRLGK* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1642 578 Pfam GMC oxidoreductase 419 565 IPR007867 GO:0016614
Pvu5g1642 578 PANTHER OSJNBA0019K04.7 PROTEIN 2 578 - -
Pvu5g1642 578 ProSitePatterns GMC oxidoreductases signature 2. 282 296 IPR000172 GO:0016614|GO:0050660
Pvu5g1642 578 Gene3D - 168 514 - -
Pvu5g1642 578 PIRSF Alcohol_oxidase 37 578 IPR012132 GO:0050660
Pvu5g1642 578 SUPERFAMILY FAD-linked reductases, C-terminal domain 319 521 - -
Pvu5g1642 578 Pfam GMC oxidoreductase 51 323 IPR000172 GO:0016614|GO:0050660
Pvu5g1642 578 SUPERFAMILY FAD/NAD(P)-binding domain 51 574 IPR036188 -
Pvu5g1642 578 Gene3D - 51 564 IPR036188 -
Pvu5g1642 578 PANTHER GLUCOSE-METHANOL-CHOLINE (GMC) OXIDOREDUCTASE FAMILY PROTEIN 2 578 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1642 Pvu-Chr5 38493986 38501455 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1642 51 575 Miscellaneous Gene Families AT5G51950 52.830 0.0 546
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1642 K15403 - gmx:100784433 1051.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1642 5 38493986 38501455 Pvu5g1642 5 38493986 38501455 ECH
Pvu5g1642 5 38493986 38501455 Pvu10g1443 10 41096426 41103291 PCT