Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1616 ATGTTAGGAGGAATTTTCGGAAACAAGGGTCAGAAGATAAAGGGGAATTTGGTGCTTATGCGAAAGAATGTGTTGGACATCAACAGCATCACCAACCCTGCCAACGTTGTTGACACCGTCTTCGACATCTTCGGCTCTGCCATCGACACTGTCACTGCTTTTGCCGCCTCCATTTCTGTCCAACTGATCAGTTCTACCAAGACTGATGCACTAGGGAAAGGAAAAGTTGGAAGTGCTACAAAGTTAAGAGGGCAAATATCTTTGCCAACCTTGGGAGCGAGTGAAGAAGCATACGATGTTAGCTTCGATTGGGACGCTGATTTTGAAATTCCTGGAGCATTTTACATCAAGAATTTCATGCAGAATGAGTTCTACCTTAAGTCTTTCACTCTCGAAGACATTCCCAACTACGGAACCATTCACTTCATATGCAACTCTTGGGTCTACAATTCTAAAAAGTACAAGAGTGATCGCATTTTCTTTGCCAACAACACATATCTTCCTAGCGAGACACCAGCTCCACTTCTGAAGTACAGAGAAGCAGAATTGAAGAATGTAAGAGGCGATGGAACTGGAAAACGTGAGGAATGGGAGAGGATTTATGATTATGATGTCTACAATGACTTGGGCAACCCAGATAAAGCTGCAGCATTAGCTCGCCCCGTTCTTGGAGGTTCTACCTTACCTTACCCTCGCAGAGGAAGAACAGGAAGAGCAAAAACCAAAAAAGATCCTAACAGTGAGAAGCCCGACGACTTTGTTTACCTTCCAAGAGACGAAGCATTTGGTCACTTGAAGTCATCAGATTTTCTCGCTTACGCATTGAAATCTGTATCGCAAGATGTGTTGCCAGTGTTGACTGATGCATTCGATGGAAGTCTTTTGAGCCTTGAGTTTGATAACTTCGCTGAAGTGCACAAGCTTTATGACGGTGGAGTTACATTGCCTACAGGCTTTCTTAGCAAATACGCTCCTATACCAATTGTCAAGGAAATTTTCCGATCTGATGGTGAACAGTTCCTCAAGTATCCACCACCTAAAGTCATGCAAGTGGATAAGTCTGCATGGATGACTGATGAAGAATTTGCAAGAGAAACCATTGCTGGTGTGAATCCTAATGTCATTAAGATTCTCAAGGAGTTCCCACCACGTAGCACGCTGGACACTCAAGCCTATGGTGATCACACCTCTATCATAACGAAAGAACATTTGGAGCCTAAATTAGGAGGGCTCACTGTAGAGCAG 1245 0.4378 MLGGIFGNKGQKIKGNLVLMRKNVLDINSITNPANVVDTVFDIFGSAIDTVTAFAASISVQLISSTKTDALGKGKVGSATKLRGQISLPTLGASEEAYDVSFDWDADFEIPGAFYIKNFMQNEFYLKSFTLEDIPNYGTIHFICNSWVYNSKKYKSDRIFFANNTYLPSETPAPLLKYREAELKNVRGDGTGKREEWERIYDYDVYNDLGNPDKAAALARPVLGGSTLPYPRRGRTGRAKTKKDPNSEKPDDFVYLPRDEAFGHLKSSDFLAYALKSVSQDVLPVLTDAFDGSLLSLEFDNFAEVHKLYDGGVTLPTGFLSKYAPIPIVKEIFRSDGEQFLKYPPPKVMQVDKSAWMTDEEFARETIAGVNPNVIKILKEFPPRSTLDTQAYGDHTSIITKEHLEPKLGGLTVEQ 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1616 415 Gene3D - 167 265 - -
Pvu5g1616 415 MobiDBLite consensus disorder prediction 226 250 - -
Pvu5g1616 415 Gene3D - 355 415 - -
Pvu5g1616 415 PRINTS Plant lipoxygenase signature 132 150 IPR001246 GO:0016491
Pvu5g1616 415 PRINTS Plant lipoxygenase signature 158 179 IPR001246 GO:0016491
Pvu5g1616 415 PRINTS Plant lipoxygenase signature 197 213 IPR001246 GO:0016491
Pvu5g1616 415 PRINTS Plant lipoxygenase signature 229 248 IPR001246 GO:0016491
Pvu5g1616 415 PRINTS Plant lipoxygenase signature 296 317 IPR001246 GO:0016491
Pvu5g1616 415 PRINTS Plant lipoxygenase signature 341 357 IPR001246 GO:0016491
Pvu5g1616 415 PRINTS Plant lipoxygenase signature 380 399 IPR001246 GO:0016491
Pvu5g1616 415 ProSiteProfiles PLAT domain profile. 36 162 IPR001024 GO:0005515
Pvu5g1616 415 Gene3D PLAT/LH2 domain 5 166 - -
Pvu5g1616 415 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 10 166 IPR036392 GO:0005515
Pvu5g1616 415 PANTHER SEED LINOLEATE 9S-LIPOXYGENASE-3 1 414 - -
Pvu5g1616 415 SUPERFAMILY Lipoxigenase 167 415 IPR036226 -
Pvu5g1616 415 Pfam PLAT/LH2 domain 70 161 IPR001024 GO:0005515
Pvu5g1616 415 SMART LH2_4 11 163 IPR001024 GO:0005515
Pvu5g1616 415 Gene3D - 266 354 IPR027433 -
Pvu5g1616 415 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 165 415 IPR013819 GO:0016702|GO:0046872
Pvu5g1616 415 CDD PLAT_LH2 12 163 IPR042057 -
Pvu5g1616 415 PANTHER LIPOXYGENASE 1 414 IPR000907 GO:0016702|GO:0046872
Pvu5g1616 415 Pfam Lipoxygenase 175 415 IPR013819 GO:0016702|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1616 Pvu-Chr5 38262821 38265859 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1616 1 415 Acyl Lipid Metabolism Gene Families AT1G55020 50.234 1.17e-136 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1616 K15718 - pvu:PHAVU_005G1568000 834.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1616 5 38262821 38265859 Pvu10g1410 10 40827600 40832928 PCT