Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1607 ATGAATTTGCAACAAGCTGGGCAGCCCAAATCCTCCAATGGATATGGCCGCCGAAAATCTGAAAGAGAAGGGGCAATTAAATCTGAGAATAAAATCTTGTCTGGCAAATTAAATGCCAGCAGATTAACAAATACAGGTGTGGTGATTGGCAGTAAAGGTGGCAATTGCGAGAGTCCTTCACATGATCGATTAGTATATCTAACAACATGTCTTATTGGGCACCAGGTGGAAGTCCAGGTGAAAAATGGATCCACATACTCTGGAGTCTTTCATGCAACAAACACGGACAAAGATTTTGGAATTGTTTTGAAAATGGCTCGCTTAACAAAAGACGGTTCATCACGAGGACAGAAATCTGGTGCAGAATTTGTCAGCAAGCCCCCTATCAAGATTTTAGTTATACCTGCCAAAGATCTTGTTCAAGTTACAGCACAGGATGTTGCTATTGCCAGGGATGGTTTACCAAATGAATCTCACCATGATATGCATCAGGAAATCATGGTTGATTCATTGATATCTCAATCTCGTCATGTTGAGCTAGGGAGAGAATTAAAACCCTGGGTACCTGATGAAGATGATCCACAATGCCCAGAACTGGAAAACATATTTGATGGCCATTGGAACAGGGGATGGGATCAGTTTGAAACAAATGAGGCATTGTTTGGTGTCAAGAGCACGTTCGACGAGGAACTCTATACAACAAAGCTTGAAAAAGGGCCTCAGACAAGAGAATTGGAAAAGCAAGCTTTAAGAATAGCAAGAGAAATTGAGGGTGAGGAAACCCAAGATCTTCATCTCGCGGAGGAAAGAGGCTTTCACTTGCATGGAGACTTCGATATTGATGAAGAAACTAGATTTTCTTCAGTTTATAGGGGTAAACGTGCTGATGACAGTGGATTTGATGAGGATGTACTGTTTGATTCCCACAATTCTGATACTTTTGGTGGTGTATTTGGTTCGGTTGTTAAGAGGTCTAGTGAGATTAGTGGTGGAAAAGGCAATGAAGGAGCTCGAACATTGGCAAATTCCTCTGTGGATCACACACAATCATCTCAGTCAAGTACCTGTGTTGATTTAAGCCGTTCTGGTTCTTATGATCACGCTAAGCAGTTAGCATCTGAACTCCCTGCCGTACGCTATTCATCAGTGGAAGGGGAAAGCAGGATTCTGGAGAACTCAATTAGTAATCAACATGGAGACAATGATACCAAGGAAGCAACTCTGATTCAAGCTGAAGATGTTCAACTGTCAAAATCTGAGGATTCACAGGGACCACTCTACTTGAAGAAGGATGGCTCTGATAAAGGTGTTTTATCTCCTAATGCTAGCTCCTATGCCCCTTCAATTCATACTACATCAACAACTCACGAAATTTTACGGGGATCACGGGGAGATTTAATTGAGGGTTCAGCATCTGGCAAGGTTAATGGGGAAACAAAATCTGTAAATTCACGTGGGACCCCATATGGGTTAGATTCAGTTGGAGGCACTGCAGCATCTTCTGGTCCTGGCTTATCTCCAAGTTCATCAGTTGGTTCACTGTCTTCTGAAAAGTCAACTCTGAATCCTAATGCAAAGGAATTCAAGCTTAACCCTAATGCAAAGAGTTTTGTTCCATCACCTGCTCGGCCTCCCACTCCAGTGTCCGATGGTTCCTTCTATTTTCCAACTACTGTAACTACTGTACCAAGTATGCCAGGCATGCCCATGGGTATTGGAATTGGACCTACTTTTGCTGGTCCACAACCTATGATGTATAATCCTCAGGTAGCACCAATGCCGTCTCAAGCATATTTTCATCCGAATGCACCACAGTATGGACAGCTCCTTGGTCATCCTAGGCAAGCTTTATACATGCCGAATTACCTGCCCGAAATGCCATACAAGGGACGGGACTATTGA 1902 0.4301 MNLQQAGQPKSSNGYGRRKSEREGAIKSENKILSGKLNASRLTNTGVVIGSKGGNCESPSHDRLVYLTTCLIGHQVEVQVKNGSTYSGVFHATNTDKDFGIVLKMARLTKDGSSRGQKSGAEFVSKPPIKILVIPAKDLVQVTAQDVAIARDGLPNESHHDMHQEIMVDSLISQSRHVELGRELKPWVPDEDDPQCPELENIFDGHWNRGWDQFETNEALFGVKSTFDEELYTTKLEKGPQTRELEKQALRIAREIEGEETQDLHLAEERGFHLHGDFDIDEETRFSSVYRGKRADDSGFDEDVLFDSHNSDTFGGVFGSVVKRSSEISGGKGNEGARTLANSSVDHTQSSQSSTCVDLSRSGSYDHAKQLASELPAVRYSSVEGESRILENSISNQHGDNDTKEATLIQAEDVQLSKSEDSQGPLYLKKDGSDKGVLSPNASSYAPSIHTTSTTHEILRGSRGDLIEGSASGKVNGETKSVNSRGTPYGLDSVGGTAASSGPGLSPSSSVGSLSSEKSTLNPNAKEFKLNPNAKSFVPSPARPPTPVSDGSFYFPTTVTTVPSMPGMPMGIGIGPTFAGPQPMMYNPQVAPMPSQAYFHPNAPQYGQLLGHPRQALYMPNYLPEMPYKGRDY* 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1607 633 Coils Coil 242 262 - -
Pvu5g1607 633 MobiDBLite consensus disorder prediction 336 361 - -
Pvu5g1607 633 MobiDBLite consensus disorder prediction 415 454 - -
Pvu5g1607 633 Pfam Ataxin 2 SM domain 61 145 IPR025852 -
Pvu5g1607 633 MobiDBLite consensus disorder prediction 1 25 - -
Pvu5g1607 633 Pfam LsmAD domain 221 291 IPR009604 -
Pvu5g1607 633 MobiDBLite consensus disorder prediction 474 490 - -
Pvu5g1607 633 MobiDBLite consensus disorder prediction 466 549 - -
Pvu5g1607 633 Gene3D - 68 132 - -
Pvu5g1607 633 MobiDBLite consensus disorder prediction 327 361 - -
Pvu5g1607 633 MobiDBLite consensus disorder prediction 499 529 - -
Pvu5g1607 633 PANTHER ATAXIN 2-RELATED 4 626 IPR045117 GO:0003723
Pvu5g1607 633 PANTHER ATAXIN-2 HOMOLOG 4 626 - -
Pvu5g1607 633 MobiDBLite consensus disorder prediction 437 454 - -
Pvu5g1607 633 SMART LsmAD_2 221 292 IPR009604 -
Pvu5g1607 633 Pfam Ataxin-2 C-terminal region 517 529 IPR009818 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1607 Pvu-Chr5 38209129 38216672 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1607 - - gmx:100812754 1068.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1607 5 38209129 38216672 Pvu5g1607 5 38209129 38216672 ECH
Pvu5g1607 5 38209129 38216672 Pvu10g1385 10 40506570 40509450 PCT