Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1605 ATGGGAAACAAATTGGTGTTAGTTCTTGTAGCAGTGGCCCTTGTTATGGGTCCAAAAAATGTGAGTGCTCAGAACTGTGGCTGTGCTGAAGGGTTATGCTGCAGCCAATACGGGTACTGTGGTACTGGTGAAGATTACTGTGGCACAGGGTGCCAGCAGGGTCCTTGTACCACAGCAAGTCCCCCACCAAGCAACAACGTTAATGTTGCAGACATTGTCACAGCAGATTTTTTCAACGGCATAATTGATCAAGCTGATTCTGGTTGTGCTGGCAAGAACTTTTACACAAGAGACGCTTTCCTCAGTGCTCTCAATTCCTACACTGACTTCGGTAGAGTTGGTTCCGAGGATGACTCCAAACGCGAGATTGCAGCTGCTTTTGCCCATTTCACACATGAAACTGGACATTTTTGCTACATCGAAGAGATAGATGGTGCAAGCAAGGATTACTGCGACGAGGAATCGATAGCACAGTATCCATGTTCTTCGAGCAAAGGGTACCACGGTCGTGGTCCGATCCAATTGTCTTGGAACTTCAACTATGGACCAGCAGGAAGTGCGAACAATTTCGACGGATTGGGCGCTCCAGAGACAGTGTCGAACGATGTTGTGGTGTCTTTCAAGACAGCATTGTGGTACTGGATGCAGCACGTGCGGCCTGTCATAAACCAGGGCTTCAGTGCAACCATCAGAGCCATCAATGGTGCACTCGAGTGTGATGGTGCCAACCCCACCACTGTTCAGGCTCGCGTTAATTACTACACAGAATACTGCAGACAATTGGGTGTTGCCACCGGTGATAATCTCACTTGCTAA 816 0.4853 MGNKLVLVLVAVALVMGPKNVSAQNCGCAEGLCCSQYGYCGTGEDYCGTGCQQGPCTTASPPPSNNVNVADIVTADFFNGIIDQADSGCAGKNFYTRDAFLSALNSYTDFGRVGSEDDSKREIAAAFAHFTHETGHFCYIEEIDGASKDYCDEESIAQYPCSSSKGYHGRGPIQLSWNFNYGPAGSANNFDGLGAPETVSNDVVVSFKTALWYWMQHVRPVINQGFSATIRAINGALECDGANPTTVQARVNYYTEYCRQLGVATGDNLTC* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1605 271 PANTHER CHITINASE-RELATED 4 271 - -
Pvu5g1605 271 SMART ChitinBD_3 25 56 IPR001002 GO:0008061
Pvu5g1605 271 Gene3D - 68 271 - -
Pvu5g1605 271 Pfam Chitin recognition protein 23 56 IPR001002 GO:0008061
Pvu5g1605 271 ProSitePatterns Chitin recognition or binding domain signature. 28 47 IPR018371 GO:0008061
Pvu5g1605 271 ProSitePatterns Chitinases family 19 signature 1. 89 111 IPR000726 GO:0004568|GO:0006032|GO:0016998
Pvu5g1605 271 ProSiteProfiles Chitin-binding type-1 domain profile. 23 58 IPR001002 GO:0008061
Pvu5g1605 271 PANTHER ENDOCHITINASE EP3-LIKE 4 271 - -
Pvu5g1605 271 SUPERFAMILY Plant lectins/antimicrobial peptides 21 62 IPR036861 GO:0008061
Pvu5g1605 271 Gene3D - 17 67 IPR036861 GO:0008061
Pvu5g1605 271 PRINTS Chitin-binding domain signature 26 34 IPR001002 GO:0008061
Pvu5g1605 271 PRINTS Chitin-binding domain signature 34 41 IPR001002 GO:0008061
Pvu5g1605 271 PRINTS Chitin-binding domain signature 41 48 IPR001002 GO:0008061
Pvu5g1605 271 Gene3D Endochitinase, domain 2 143 201 - -
Pvu5g1605 271 SUPERFAMILY Lysozyme-like 68 271 IPR023346 -
Pvu5g1605 271 CDD chitinase_GH19 73 271 - -
Pvu5g1605 271 PIRSF Endochitinase 2 271 IPR016283 GO:0004568|GO:0005975
Pvu5g1605 271 CDD ChtBD1 28 52 - -
Pvu5g1605 271 Pfam Chitinase class I 72 217 IPR000726 GO:0004568|GO:0006032|GO:0016998
Pvu5g1605 271 Pfam Chitinase class I 225 271 IPR000726 GO:0004568|GO:0006032|GO:0016998
Pvu5g1605 271 ProSitePatterns Chitinases family 19 signature 2. 205 215 IPR000726 GO:0004568|GO:0006032|GO:0016998
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1605 Pvu-Chr5 38198741 38200321 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1605 1 271 Glycoside Hydrolase AT3G54420 69.742 5.07e-141 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1605 K01183 - gmx:100776582 479.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1605 5 38198741 38200321 Pvu5g1605 5 38198741 38200321 ECH
Pvu5g1605 5 38198741 38200321 Pvu11g0528 11 4385181 4386182 PCT