Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0528 ATGAGCAAGGTTGCAGGGTTTGTGGCAACCTTATTCATGGTGGTGATGATGATGATGGTGCCAAAAACAGAGAGTGCCCTGCATATAGCTGACATCGTCACAAGACAATTCTTCAACAACATAATCAATAAGGCTGATGGTGATTGTCCAGGGAAGAGCTTCTACTCACGTGATGCTTTCCTCAAAGCTCACAATTCCTACCCTCGCTTTGGTAGTCTCAGAAATGAAGATGACTCCAAACGTGAAGTTGCAGCTGCTTTTGCTCATTTCACACATGAAAGTGGACATTTTTGCTACATAGAAGAGATTGGAGGAGCATCAAGGGACTACTGTGATGAAAGCAACACTGAGTTTCCATGTGTCCCTAGCAAAGGGTACTATGGTCGTGGACCGATCCAACTATCTTGGAACTTCAACTATGGACCAGCAGGACAGAACATCGGTTTTGATGGGTTGAATGCTCCGGAGACAGTGGCCAATGACCCTGTCGTGTCCTTCAAGACAGCATTGTGGTACTGGATGGAGTTTGTTCGCCCTGTCATGAACCAGGGCTTTGGTGCAACCATTAGAGCCATCAATGGCCAGCTTGAATGTGATCAAGGAAACCCTGCCACTGTCCAGGCTCGTGTTAATCACTACACACACTACTGTTCTCAACTTGGTGTTGCTCCTGGTGACAATCTTTATTGCTAA 693 0.4618 MSKVAGFVATLFMVVMMMMVPKTESALHIADIVTRQFFNNIINKADGDCPGKSFYSRDAFLKAHNSYPRFGSLRNEDDSKREVAAAFAHFTHESGHFCYIEEIGGASRDYCDESNTEFPCVPSKGYYGRGPIQLSWNFNYGPAGQNIGFDGLNAPETVANDPVVSFKTALWYWMEFVRPVMNQGFGATIRAINGQLECDQGNPATVQARVNHYTHYCSQLGVAPGDNLYC* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0528 230 ProSitePatterns Chitinases family 19 signature 2. 164 174 IPR000726 GO:0004568|GO:0006032|GO:0016998
Pvu11g0528 230 PANTHER ENDOCHITINASE EP3-LIKE 17 230 - -
Pvu11g0528 230 PANTHER CHITINASE-RELATED 17 230 - -
Pvu11g0528 230 ProSitePatterns Chitinases family 19 signature 1. 49 71 IPR000726 GO:0004568|GO:0006032|GO:0016998
Pvu11g0528 230 SUPERFAMILY Lysozyme-like 29 230 IPR023346 -
Pvu11g0528 230 CDD chitinase_GH19 33 230 - -
Pvu11g0528 230 Gene3D - 28 230 - -
Pvu11g0528 230 PIRSF Endochitinase 6 230 IPR016283 GO:0004568|GO:0005975
Pvu11g0528 230 Gene3D Endochitinase, domain 2 101 158 - -
Pvu11g0528 230 Pfam Chitinase class I 32 175 IPR000726 GO:0004568|GO:0006032|GO:0016998
Pvu11g0528 230 Pfam Chitinase class I 183 230 IPR000726 GO:0004568|GO:0006032|GO:0016998
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0528 Pvu-Chr11 4385181 4386182 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0528 19 230 Glycoside Hydrolase AT3G54420 68.868 6.16e-111 318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0528 K01183 - gmx:100527091 385.185
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g0528 11 4385181 4386182 Pvu11g0528 11 4385181 4386182 ECH
Pvu5g1605 5 38198741 38200321 Pvu11g0528 11 4385181 4386182 PCT