Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1602 ATGAAGAAAAACCACGACGACGACAACAACAACAACGCCCAACAGAGCAAAGACACTACCGTGGGAATCCTAGATTCCCGATTCAACCAGACCCTCAGAAATGTTCAAGGGTTACTCAAGGGTCGTAACATTCCTGGTAAAATATTATTGAGCCAGAGGGTTGGTTCTCCAGATTACTCAAGCTTATCCTCACCAACTTATGTAAGGAACTCCTCATACAGTGATACTGGCACAAGTGACCACACATCCGAGAGAGTAGAGAAGGAAGCTCAGAGTACAAGTAAATCATTTGGTACTCCCAATGAGAATAAGTTAAAAGTATCGGCATCCAATGTAGAGAGCCTGTCTGAAGAAGTGCAGAAATCTTCATTGGGTGCTAGAGCTACAGATTCTGCTAGGGTTGTGAAGTTCACTAAGGTGCTTTCTGGGACGTTGGTTGTATTAGAGAAATTGCGTGAATTATCTTGGAGTGGTGTTCCAGATTACATGCGTCCTACAGTGTGGAGACTTCTCTTGGGATATGCACCAACTAATTCAGATAGAAGGGAAGGGGTTTTGAGAAGAAAGCGCCTTGAGTATCTTGACTCTGTTGCTCAGTATTATGATATTCCTGATACAGAACGCTCAGATGATGAGATCAATATGCTTCGCCAGATTGCTGTTGATTGTCCAAGAACTGTACCTGAAGTGTCATTCTTTCAGCAAGAGCAAGTTCAAAAATCATTGGAGCGTATTCTTTACACATGGGCAATCCGGCATCCTGCAAGTGGATATGTTCAGGGGATAAATGATCTTGTTACGCCATTTTTAGTTGTTTTCCTATCAGAATACTTAAAGGGGGCCATAGATAATTGGTCAATGTCTGATTTATCTTCGGATCAAATCTCTAATGTAGAAGCCGATTGCTATTGGTGTCTGTCAAAGTTGCTTGATGGCATGCAAGATCATTATACATTTGCTCAACCAGGAATTCAAAGGCTTGTTTTTAAGTTGAAGGAATTGGTCAGGAGGATTGACGATCCTGTTTCAAGCCATATGGAGGAGCAAGGACTGGAATTTCTTCAATTTGCTTTCCGCTGGTTCAACTGTCTTCTAATTCGAGAGGTACCCTTCCATTTGGTCACACGTCTTTGGGACACGTATCTAGCTGAAGGAGATGCCTTACCAGACTTCCTTGTGTATATATTTGCCAGTTTTCTTCTAACGTGGTCAGAGCAGCTCCAGAAGCTTGATTTCCAAGAGTTGGTAATGTTCCTTCAACACCTTCCAACTAAAAACTGGACGCACCAGGAGCTCGAGATGGTACTTTCTCGTGCGTTTATGTGGCACAGCATGTTCAACAACTGTCCCAGCCATTTAGCTAACTGA 1368 0.4276 MKKNHDDDNNNNAQQSKDTTVGILDSRFNQTLRNVQGLLKGRNIPGKILLSQRVGSPDYSSLSSPTYVRNSSYSDTGTSDHTSERVEKEAQSTSKSFGTPNENKLKVSASNVESLSEEVQKSSLGARATDSARVVKFTKVLSGTLVVLEKLRELSWSGVPDYMRPTVWRLLLGYAPTNSDRREGVLRRKRLEYLDSVAQYYDIPDTERSDDEINMLRQIAVDCPRTVPEVSFFQQEQVQKSLERILYTWAIRHPASGYVQGINDLVTPFLVVFLSEYLKGAIDNWSMSDLSSDQISNVEADCYWCLSKLLDGMQDHYTFAQPGIQRLVFKLKELVRRIDDPVSSHMEEQGLEFLQFAFRWFNCLLIREVPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSEQLQKLDFQELVMFLQHLPTKNWTHQELEMVLSRAFMWHSMFNNCPSHLAN* 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1602 455 MobiDBLite consensus disorder prediction 54 103 - -
Pvu5g1602 455 Gene3D - 136 186 - -
Pvu5g1602 455 SMART tbc_4 155 411 IPR000195 -
Pvu5g1602 455 MobiDBLite consensus disorder prediction 54 79 - -
Pvu5g1602 455 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 193 319 - -
Pvu5g1602 455 ProSiteProfiles TBC/rab GAP domain profile. 158 385 IPR000195 -
Pvu5g1602 455 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 321 443 IPR035969 -
Pvu5g1602 455 Pfam Rab-GTPase-TBC domain 162 406 IPR000195 -
Pvu5g1602 455 PANTHER RAB-GTPASE-TBC DOMAIN-CONTAINING PROTEIN-RELATED 7 452 - -
Pvu5g1602 455 Gene3D - 320 455 - -
Pvu5g1602 455 MobiDBLite consensus disorder prediction 1 22 - -
Pvu5g1602 455 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 7 452 - -
Pvu5g1602 455 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 137 345 IPR035969 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1602 Pvu-Chr5 38186848 38192479 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1602 K20360 - gmx:100785695 833.558
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1602 5 38186848 38192479 Pvu5g1602 5 38186848 38192479 ECH
Pvu5g1602 5 38186848 38192479 Pvu11g0531 11 4401734 4409887 PCT