Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0531 ATGAACGAGAGCCAAGAAGATGAGCGTAAGATAGCTACTACCCTTGACTCCAGATTGAATCAGACCCTCAAAAATGTTCAAGGGTTACTCAAAGGTCGCAGCATACCCGGTAAAATATTGTTGAGCCGTAGCCCTCCGGATAACTCAAACTCAAAGATATCAAATAACCCAAACTCAGAGATATCCTCACCAAGTTACAAGAGGAGCTTTTCTCACAACGATGCTAGTCCAAGCGATCACACATCTGGGGCAAAAGAGAAGGAATTTCACAGTACAAGCAAACCAATTAGTATTGCCAATGCCAGTAAGCTAAAGGTGTCTACCTCCTTTGGTGGCAACCTGCCTGAAGAAATCCGCAAGTCTACAATGGGTGCTAGAGCTACGGATTCTGCAAGAGTTATGAAGTTCACTAAGGTCCTTTCAGAGACAGTGGTTATATTAGACAAGTTGCGTGAATTAGCTTGGAGTGGTGTTCCAGACAAAATGCGTCCTGAAGTGTGGAGACTTCTGTTGGGATATGCACCACCTAATTCAGATAGACGGGAGGGAGTTCTAAGAAGGAAGCGCCTTGAGTATCTTGACTGTATATCCCAGTATTACGATATTCCAGATACAGAACGTTCAGATGATGAGGTCAACATGCTTCGTCAGATTGGTGTTGATTGTCCAAGAACTGTACCCGATGTTCCATTCTTCCAGCAACAGCTAGTTCAGAAATCACTGGAACGTATTCTTTATGCATGGGCCATTCGGCATCCAGCAAGTGGATATGTTCAGGGGATAAATGATCTTGTTACACCATTTTTGGTTGTTTTCTTATCAGAGTATTTTGAAGGGGATATAGATAATTGGTCCATGTCTGATTTATCTCCAGATACAATCTCTAATATAGAGGCAGACTGCTACTGTTGCTTGTCAAAGTTGCTTGATGGTATGCAAGATCATTTCACATTCGCTCAACCTGGAATTCAGAGGCTTGTTTTTAAGTTGAAGGAATTGGTCAGGAGAATTGACGAGCCTGTTTCCCGGCACATGGAGGACCAGGGACTTGAATTTCTTCAGTTTGCTTTCCGCTGGTTCAACTGTCTTCTCATCCGTGAGATACCATTTCATCTCATCACGCGCCTTTGGGATACATATTTAGCTGAAGGAGATGCCTTACCAGACTTCCTAATATATATATTTGCCAGCTTCCTTCTAACGTGGTCAGACAAGCTCCAGAAGTTTGATTTCCAAGAATTGGTAATGTTCCTTCAGAACCTCCCAACAGATAATTGGACTCACCAAGAGCTTGAGATGGTGCTTTCTCGGGCATTTATGTGGCACACCATGTTCAACAACTCTCCCAGCCATTTAATTAACTGA 1365 0.43 MNESQEDERKIATTLDSRLNQTLKNVQGLLKGRSIPGKILLSRSPPDNSNSKISNNPNSEISSPSYKRSFSHNDASPSDHTSGAKEKEFHSTSKPISIANASKLKVSTSFGGNLPEEIRKSTMGARATDSARVMKFTKVLSETVVILDKLRELAWSGVPDKMRPEVWRLLLGYAPPNSDRREGVLRRKRLEYLDCISQYYDIPDTERSDDEVNMLRQIGVDCPRTVPDVPFFQQQLVQKSLERILYAWAIRHPASGYVQGINDLVTPFLVVFLSEYFEGDIDNWSMSDLSPDTISNIEADCYCCLSKLLDGMQDHFTFAQPGIQRLVFKLKELVRRIDEPVSRHMEDQGLEFLQFAFRWFNCLLIREIPFHLITRLWDTYLAEGDALPDFLIYIFASFLLTWSDKLQKFDFQELVMFLQNLPTDNWTHQELEMVLSRAFMWHTMFNNSPSHLIN* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0531 454 Gene3D - 134 185 - -
Pvu11g0531 454 SMART tbc_4 154 410 IPR000195 -
Pvu11g0531 454 MobiDBLite consensus disorder prediction 1 20 - -
Pvu11g0531 454 Pfam Rab-GTPase-TBC domain 160 406 IPR000195 -
Pvu11g0531 454 MobiDBLite consensus disorder prediction 43 78 - -
Pvu11g0531 454 MobiDBLite consensus disorder prediction 28 94 - -
Pvu11g0531 454 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 320 442 IPR035969 -
Pvu11g0531 454 Gene3D - 319 454 - -
Pvu11g0531 454 ProSiteProfiles TBC/rab GAP domain profile. 157 384 IPR000195 -
Pvu11g0531 454 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 194 318 - -
Pvu11g0531 454 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 134 344 IPR035969 -
Pvu11g0531 454 PANTHER GTPASE-ACTIVATING PROTEIN GYP1-LIKE 3 451 - -
Pvu11g0531 454 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 3 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0531 Pvu-Chr11 4401734 4409887 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0531 K20360 - gmx:100819281 808.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1602 5 38186848 38192479 Pvu11g0531 11 4401734 4409887 PCT