Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1576 ATGCCAACTATTTTGCATAGGTTTTTTCTTCTTTACAATCTCCTACACCCATTTCTCCTGTTTCTGGTTCCCAAGAAGGTGCGAGCCATCCTCTCCCCTTCTTGGTTCCGATCAACCACCACACCACCACCACCCTCTTCTTCCTCCTCCAGGCTCATCACCACAATTTCACCACCAATGGACCCCCACGAGCTCAAGCGCGTCTTCCAGATGTTCGACCGCAACGGTGACGGGAGAATCACGAAGAAGGAGCTCAACGACTCCTTGGAGAATCTGGGCATTTTCATTCCCGACAAGGAGCTTACCCTGATGATCGAGAGAATAGACGTTAACGGAGATGGGTGTGTCGACATCGATGAGTTCGGGGAGCTCTACCAGCACATCATGGACGACCGTGACGAGGACGAGGACATGCGAGAGGCCTTCAACGTCTTCGACCAGAACGGCGATGGCTTCATCACGGTGGAAGAGTTGAGGACCGTTTTGTCCTCGCTGGGGTTGAAGCAGGGGAGAACGGTGGAGGACTGCAAGAAGATGATCATGAAGGTGGACGTTGATGGAGATGGAATGGTCGATTACAAGGAGTTCAAGCAAATGATGAAAGGGGGTGGCTTCAGTGCTCTCACTTGA 630 0.5206 MPTILHRFFLLYNLLHPFLLFLVPKKVRAILSPSWFRSTTTPPPPSSSSSRLITTISPPMDPHELKRVFQMFDRNGDGRITKKELNDSLENLGIFIPDKELTLMIERIDVNGDGCVDIDEFGELYQHIMDDRDEDEDMREAFNVFDQNGDGFITVEELRTVLSSLGLKQGRTVEDCKKMIMKVDVDGDGMVDYKEFKQMMKGGGFSALT* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1576 209 ProSiteProfiles EF-hand calcium-binding domain profile. 96 131 IPR002048 GO:0005509
Pvu5g1576 209 CDD EFh 141 201 IPR002048 GO:0005509
Pvu5g1576 209 CDD EFh 64 121 IPR002048 GO:0005509
Pvu5g1576 209 ProSitePatterns EF-hand calcium-binding domain. 109 121 IPR018247 -
Pvu5g1576 209 ProSiteProfiles EF-hand calcium-binding domain profile. 171 206 IPR002048 GO:0005509
Pvu5g1576 209 ProSiteProfiles EF-hand calcium-binding domain profile. 60 95 IPR002048 GO:0005509
Pvu5g1576 209 Gene3D - 58 127 - -
Pvu5g1576 209 ProSitePatterns EF-hand calcium-binding domain. 73 85 IPR018247 -
Pvu5g1576 209 Gene3D - 128 203 - -
Pvu5g1576 209 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 6 207 - -
Pvu5g1576 209 ProSitePatterns EF-hand calcium-binding domain. 184 196 IPR018247 -
Pvu5g1576 209 SUPERFAMILY EF-hand 55 202 IPR011992 -
Pvu5g1576 209 ProSiteProfiles EF-hand calcium-binding domain profile. 133 168 IPR002048 GO:0005509
Pvu5g1576 209 SMART efh_1 100 128 IPR002048 GO:0005509
Pvu5g1576 209 SMART efh_1 137 165 IPR002048 GO:0005509
Pvu5g1576 209 SMART efh_1 64 92 IPR002048 GO:0005509
Pvu5g1576 209 SMART efh_1 175 203 IPR002048 GO:0005509
Pvu5g1576 209 Pfam EF-hand domain pair 136 201 IPR002048 GO:0005509
Pvu5g1576 209 Pfam EF-hand domain pair 64 126 IPR002048 GO:0005509
Pvu5g1576 209 ProSitePatterns EF-hand calcium-binding domain. 146 158 IPR018247 -
Pvu5g1576 209 PANTHER BNAA04G25000D PROTEIN 6 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1576 Pvu-Chr5 37989265 37990592 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1576 7 207 EF-hand Containing Proteins AT2G43290 63.507 7.07e-91 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1576 K13448 - gmx:100527487 316.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1576 5 37989265 37990592 Pvu5g1576 5 37989265 37990592 ECH
Pvu5g1576 5 37989265 37990592 Pvu11g0555 11 4583824 4584276 PCT