Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0555 ATGGAGGCGGTGGAGCTGAAGCGCGTGTTCGAGATGTTCGATCGGAACGGCGATGGCCGAATATCGGTGGAGGAGCTCAGAGATTCGCTGGTGAATATGGGGATAGAGATTCCGGAGAAGGAGCTGGCGGATATGATCCAGAGGATCGACGTCAACGGCGACGGCTGCCTGGATATGGAGGAGTTCGGGGAGCTCTACGAGTCGATAATGGAGGAGCGCGACGAGGAGGAGGACATGCTGGAGGCCTTTAACGTCTTCGATCAGAACCGCGACGGCTTCATCTCCGTGGACGAGCTCCGCACCGTGCTCGCCTCCCTGGGCCTCCACCAAGGGAGGAGCCTGGAGGAGTGCCGGAAGATGATCGTGAAAGTGGACATTGACGGCGATGGCATGGTGAACTACAAGGAATTCAGGCAAATGATGAAGAGTGGAGGATTCTCTGGTCTTGGTTAA 453 0.5695 MEAVELKRVFEMFDRNGDGRISVEELRDSLVNMGIEIPEKELADMIQRIDVNGDGCLDMEEFGELYESIMEERDEEEDMLEAFNVFDQNRDGFISVDELRTVLASLGLHQGRSLEECRKMIVKVDIDGDGMVNYKEFRQMMKSGGFSGLG* 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0555 150 SMART efh_1 41 69 IPR002048 GO:0005509
Pvu11g0555 150 SMART efh_1 5 33 IPR002048 GO:0005509
Pvu11g0555 150 SMART efh_1 78 106 IPR002048 GO:0005509
Pvu11g0555 150 SMART efh_1 116 144 IPR002048 GO:0005509
Pvu11g0555 150 ProSiteProfiles EF-hand calcium-binding domain profile. 74 109 IPR002048 GO:0005509
Pvu11g0555 150 ProSitePatterns EF-hand calcium-binding domain. 87 99 IPR018247 -
Pvu11g0555 150 ProSitePatterns EF-hand calcium-binding domain. 14 26 IPR018247 -
Pvu11g0555 150 PANTHER CALMODULIN-LIKE PROTEIN 3 1 148 - -
Pvu11g0555 150 ProSiteProfiles EF-hand calcium-binding domain profile. 112 147 IPR002048 GO:0005509
Pvu11g0555 150 SUPERFAMILY EF-hand 5 143 IPR011992 -
Pvu11g0555 150 Gene3D - 68 145 - -
Pvu11g0555 150 ProSitePatterns EF-hand calcium-binding domain. 50 62 IPR018247 -
Pvu11g0555 150 Gene3D - 3 67 - -
Pvu11g0555 150 ProSiteProfiles EF-hand calcium-binding domain profile. 1 36 IPR002048 GO:0005509
Pvu11g0555 150 ProSiteProfiles EF-hand calcium-binding domain profile. 37 72 IPR002048 GO:0005509
Pvu11g0555 150 Pfam EF-hand domain pair 5 66 IPR002048 GO:0005509
Pvu11g0555 150 Pfam EF-hand domain pair 76 142 IPR002048 GO:0005509
Pvu11g0555 150 ProSitePatterns EF-hand calcium-binding domain. 125 137 IPR018247 -
Pvu11g0555 150 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 1 148 - -
Pvu11g0555 150 CDD EFh 82 142 IPR002048 GO:0005509
Pvu11g0555 150 CDD EFh 5 62 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0555 Pvu-Chr11 4583824 4584276 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0555 1 150 EF-hand Containing Proteins AT3G07490 71.333 2.65e-69 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0555 K13448 - gmx:100796922 235.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1576 5 37989265 37990592 Pvu11g0555 11 4583824 4584276 PCT