Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1572 ATGTCGGTCGTTTCTGTGTTTGGTTTGGGCCGAATCCATGTCTCCCTTTCAGCCAAAACTACTCAATTTTTTTCCTCAAAACCTCATTCAGTGTCTCAACTTGGAGCCTCTGTGACCAGCAAAAGAACCAGAAAAGGCTTGCAGCTTCAACACGTTCCCCAAATTGAAACAGAAAACCATCAGAAAGAGATCCCAGGATTTGCAAATGAATTGGTTCCAAGAGGTGAAGCCCCTGAGAATTGGGAAAAGGTTCTTCAAGGGATTCGCCAAATGAGGAGTTCGGCAGATGAACATGAACCAGTTGCACGCGAGGAAGCTGCTGATAATAGTGAAAGAAGATTTGCTGTCTTGGCATCTTCCCTTTTATCAAGCCAAACTAAGGAGCATGTTACTCGTGGAGCGACTCAACGTCTTCGTGAAAATGGCCTTCTTACCGCTGAAGCAATGAACAAAGCTGATGAAGAAACCATCAAAAATTTGATTTACCCTGTTGGATTTTACACAAGAAAAGCCAGTAACTTGAAGAAAATTGCTAATATTTGCCTCATGAAGTATGATGGAGACATACCTAGCTCAATTGGGGACCTACTCTTGCTGCCAGGAGTAGGTCCTAAGATTGCTCATCTGGTTATGATTATGGGATGGAACAATGTCCAAGGGATATGTGTAGATACTCACGTCCACCGCATTTGCAATCGTCTTGGGTGGGTTTCCAGATCAGGCTCAAAACAGGTAGGATTTGGACGATCAATTTGTACTCCTCTACGGCCTCACTGTGGAGAGTGTCTTGTAAGTAGCTTCTGTCCATCAGCATACAAGGAGGCTTCAAGCTTTTCCAACTCCAAAAAACTTACACTGAACAAGAAGCCTTAA 873 0.4364 MSVVSVFGLGRIHVSLSAKTTQFFSSKPHSVSQLGASVTSKRTRKGLQLQHVPQIETENHQKEIPGFANELVPRGEAPENWEKVLQGIRQMRSSADEHEPVAREEAADNSERRFAVLASSLLSSQTKEHVTRGATQRLRENGLLTAEAMNKADEETIKNLIYPVGFYTRKASNLKKIANICLMKYDGDIPSSIGDLLLLPGVGPKIAHLVMIMGWNNVQGICVDTHVHRICNRLGWVSRSGSKQVGFGRSICTPLRPHCGECLVSSFCPSAYKEASSFSNSKKLTLNKKP* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1572 290 PANTHER ENDONUCLEASE III-LIKE PROTEIN 1 245 279 - -
Pvu5g1572 290 PANTHER ENDONUCLEASE III-LIKE PROTEIN 1 78 244 - -
Pvu5g1572 290 Gene3D - 214 244 IPR023170 -
Pvu5g1572 290 Gene3D - 245 290 IPR023170 -
Pvu5g1572 290 SMART endo3end 122 262 IPR003265 GO:0006284
Pvu5g1572 290 PANTHER ENDONUCLEASE III HOMOLOG 2, CHLOROPLASTIC 78 244 - -
Pvu5g1572 290 PANTHER ENDONUCLEASE III HOMOLOG 2, CHLOROPLASTIC 245 279 - -
Pvu5g1572 290 SUPERFAMILY DNA-glycosylase 110 274 IPR011257 GO:0003824|GO:0006281
Pvu5g1572 290 Pfam HhH-GPD superfamily base excision DNA repair protein 119 243 IPR003265 GO:0006284
Pvu5g1572 290 Gene3D Hypothetical protein; domain 2 102 213 - -
Pvu5g1572 290 SMART ccc3 251 271 IPR003651 GO:0051539
Pvu5g1572 290 ProSitePatterns Endonuclease III family signature. 187 216 IPR004036 -
Pvu5g1572 290 CDD ENDO3c 114 258 IPR003265 GO:0006284
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1572 Pvu-Chr5 37964685 37968780 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1572 K10773 - gmx:100805799 366.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1572 5 37964685 37968780 Pvu5g1572 5 37964685 37968780 ECH
Pvu5g1572 5 37964685 37968780 Pvu11g0565 11 4702294 4707687 PCT