Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0565 ATGTCTGAGAAAACTCGACCCTTTTGCAAAGTCACTCCCCCAAATCCCAACACACCCACTTCCTTTGTTGAATCTTCCAACTCCAAAGTTCGCGTCTTTGTCAGGAGAAATAAAAAACCCAGAAAAATGGCTGTTAAACTTGAAGAAGAAGACCATCTTCCGTTAACCCAGGATCACAAGGTCCCGGTTACACCCAACTCAGCCACTTCCTTTATTGAAGCTTCCCACTCCAAAGCTCGCGTCTTTGTCAGGAGAAATAAAAATCCCAGAAAAATGGCTGTCAAACTTGAAGAAGAAGACCATCTTCCCTCAACCCAGGATCACAAGGTTCCGGTTACACAGAAGTTTGGCCTTCCAGAAATCGAAGATTTTGCGTACTGTGGAGGAAATGAATTGACTCGGCGTAGGAAATCTGAAATGGAATCAGATGTGGCTTCAGTGGCAAGTGAAGTTGCTTCAACTAGACCTGGTGGTAAATCACCTGCCCACTGGGAAAAGGTGCTGGAGGGGATTCGCAAAATGAGGAGTTCTGCTGATGCACCAGTGGATACTATGGGATGTGAGAAAGCTGGTGATACACTACCTCCCAAGGAGAGAAGATTTGCTGTCCTGGTATCTTCTCTATTATCTAGCCAAACAAAGGATCCTGTTACTCATGGAGCAATTCAACGCCTTCTTCAAAATGATCTGCTTACCCCCGAAGCAATCAATAATGTTGATGAAGAGACCATCAAAAAGTTGATTTACCCTGTTGGGTTTTATACAAGAAAAGCCACTAACTTGAAAAAAATTGCAAATATTTGTCTCATGAAGTACCACGGAGACATACCTAGCTCAATTGACCAACTGCTGTTACTTCCAGGCATTGGTCCTAAGATGGCTCATTTGGTTATGAATGCTGGATGGAACAATGTCCAAGGGATATGTGTAGATACTCATGTCCACCGCATTTGCAACCGGCTTGGGTGGGTCTCAAGATTGGGCACAAATCAGAAAACTTCAACACCTGAAGAGACAAGAGAGTCACTGCAACGGTGGCTTCCAAAGGAAGAATGGGTTCCAATAAACCCTCTATTGGTAGGATTTGGACAAACAATTTGTACACCTCTAAGACCTCGTTGTGGAGAATGCAGTGTAAGAGACTTGTGTCCTTCAGCCTTCAAGGAGACCTCAAACTCAAGCCCATCTTCCAAGTCTAAAAAGCCCGGGCTGAACAAGAAGCCCTAA 1227 0.4434 MSEKTRPFCKVTPPNPNTPTSFVESSNSKVRVFVRRNKKPRKMAVKLEEEDHLPLTQDHKVPVTPNSATSFIEASHSKARVFVRRNKNPRKMAVKLEEEDHLPSTQDHKVPVTQKFGLPEIEDFAYCGGNELTRRRKSEMESDVASVASEVASTRPGGKSPAHWEKVLEGIRKMRSSADAPVDTMGCEKAGDTLPPKERRFAVLVSSLLSSQTKDPVTHGAIQRLLQNDLLTPEAINNVDEETIKKLIYPVGFYTRKATNLKKIANICLMKYHGDIPSSIDQLLLLPGIGPKMAHLVMNAGWNNVQGICVDTHVHRICNRLGWVSRLGTNQKTSTPEETRESLQRWLPKEEWVPINPLLVGFGQTICTPLRPRCGECSVRDLCPSAFKETSNSSPSSKSKKPGLNKKP* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0565 408 SMART ccc3 366 386 IPR003651 GO:0051539
Pvu11g0565 408 Pfam Helix-hairpin-helix motif 271 299 IPR000445 GO:0003677
Pvu11g0565 408 MobiDBLite consensus disorder prediction 136 162 - -
Pvu11g0565 408 Pfam HhH-GPD superfamily base excision DNA repair protein 205 347 IPR003265 GO:0006284
Pvu11g0565 408 ProSitePatterns Endonuclease III family signature. 274 303 IPR004036 -
Pvu11g0565 408 PANTHER ENDONUCLEASE III HOMOLOG 2, CHLOROPLASTIC 98 406 - -
Pvu11g0565 408 Gene3D Hypothetical protein; domain 2 194 297 - -
Pvu11g0565 408 Hamap Endonuclease III-like protein 1 [NTHL1]. 160 389 IPR030841 GO:0003906|GO:0005634|GO:0006281|GO:0006285|GO:0019104
Pvu11g0565 408 MobiDBLite consensus disorder prediction 1 23 - -
Pvu11g0565 408 ProSitePatterns Endonuclease III iron-sulfur binding region signature. 367 383 IPR004035 -
Pvu11g0565 408 MobiDBLite consensus disorder prediction 386 401 - -
Pvu11g0565 408 MobiDBLite consensus disorder prediction 386 408 - -
Pvu11g0565 408 SUPERFAMILY DNA-glycosylase 171 396 IPR011257 GO:0003824|GO:0006281
Pvu11g0565 408 SMART endo3end 209 365 IPR003265 GO:0006284
Pvu11g0565 408 Gene3D - 298 389 IPR023170 -
Pvu11g0565 408 CDD ENDO3c 201 363 IPR003265 GO:0006284
Pvu11g0565 408 PANTHER ENDONUCLEASE III-LIKE PROTEIN 1 98 406 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0565 Pvu-Chr11 4702294 4707687 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0565 K10773 - gmx:100818398 561.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1572 5 37964685 37968780 Pvu11g0565 11 4702294 4707687 PCT