Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1564 ATGGCCTACACACAAGGTTTCTTGCAGCTCCGTGCCCTAACCACTCCTGTTAGAGTTTTGCCACAGAGGGATGTGGGGACCACCCAACGAAACCACATTCTTTGCATGGCACAAAAGGAGGATGTCCAAGACGGTGACGCCACCACCCTCAGCCTTCTCTCTCGCAGATTAGCCCTCGGAACTGCTTTCGTCGGTGGTGCTGCCGCCGTCGCCAAGGTCTCACCTGCTAATGCTGCTGCTGCACAACTCTCTCTCGAGAAAGCTGGTCCTGTAGCAGTTACCACATCACCACCAAATAATAGTGAATATCCTGCATCGCTTGAGGATGCTCTTTCACTCAATCGAAGCAGTTTTCCAGATGACTTCATTTTCGGGACAGCATCTGCTGCTTACCAGTTCGAAGGAGCAGCATTTGATTATGGAAGAAAACCAAGTGTATGGGATAACTTCACCCATAAATATCCAGAGAAGATAAACGATAGAAGCAATGGGGATGTAGCAGTTGATGAATATCATCGTTACGTGGAAGATGTTCAGATAATGAAGCATATGAATCTGGATGCATATAGATTCTCCATGTCATGGTCTAGAATCGTGCCAAATGGACATGTGGGTATAAACGAGGAGGGTGTAAACCAAGAAGGAATCCAACACTACATGGACCTCATCGATGAATTAATAGCCCAGAATATAGAACCATATGTCACACTCTTTCATTGGGATACTCCTCAAGCTTTACAAGAAGAGTATGGAGGTTTCTTATCTCATCGCATTGTAGATGATTATCGAGATTATGCAAATATTTGTTTCAAATACTTTGGAGATAAGGTGAAAAATTGGATTACTTTGAATGAGCCATACACTTATAGTAGAGAAGGTTATGCAGTTGGGGATTTTGCACCTGGTCGATGTTCTGATTGGCAAGATTCAAGTTGTCTCGGTGGTGATTCAGGAACAGAACCTTATATAGTCACACATAATCTATTACTTGCTCATGCAGCTGCTGTAGAACTGTACAAGAAAATTTATCAGACAAGTGATGACAGAAAGATAGGCATAACACTTATTTCTACGTGGTTTGAGCCATATTCAGATTCTCCAGCAGATATAAATGCTGCTCAACGAGCAATTGATTTCACGCTGGGATGGTACATGCAACCATTGACAACAGGAAGATATCCAGAGAGCATGCGTACCTTAGTTGGAAAACGATTGCCAGAATTCACTGCAGATGAAACAACACTTCTTGCTAAGTCATATGATTTTATTGGATTAAACTATTACACTGCTAACTATGCTGCTGATATACCCAGAGAAGATCCTAAACCTGAATCAAAACTCCAACCTAGTTATCTTACAGATTCCAATGTCAATTATTTAACTCAACGCAATGGTGTTCCGATAGGTATACCGACCGCATCTCAATGGTTATATGTTTATCCCAAAGGATTTAAAAATATTTTGCTCTATCTCAAAGAAAAGTACGAAGATCCTTTGATTTACATAACCGAAAATGGTAGATCAAATGACGTGAATGATGAAACAAAGACTCTTGAAGAAGCTCGTATGGATATTTTTAGGATCGATTATCACTATCGTCATCTCTATTATCTACTTTCAGCAATGAGTGAGAAAGTGAATGTAAAAGGATATTTTGCATGGTCACTATTGGACAATTTTGAATGGAATACTGGTTATACATCAAGATTTGGACTAAACTATGTGGACAGAGACGATGGTTTGAAGCGATATGACAAACTCTCAGCAAAATGGTTCAGGAAATTTCTTGAAAGACCATTGAAACTCCAAGGATAA 1815 0.405 MAYTQGFLQLRALTTPVRVLPQRDVGTTQRNHILCMAQKEDVQDGDATTLSLLSRRLALGTAFVGGAAAVAKVSPANAAAAQLSLEKAGPVAVTTSPPNNSEYPASLEDALSLNRSSFPDDFIFGTASAAYQFEGAAFDYGRKPSVWDNFTHKYPEKINDRSNGDVAVDEYHRYVEDVQIMKHMNLDAYRFSMSWSRIVPNGHVGINEEGVNQEGIQHYMDLIDELIAQNIEPYVTLFHWDTPQALQEEYGGFLSHRIVDDYRDYANICFKYFGDKVKNWITLNEPYTYSREGYAVGDFAPGRCSDWQDSSCLGGDSGTEPYIVTHNLLLAHAAAVELYKKIYQTSDDRKIGITLISTWFEPYSDSPADINAAQRAIDFTLGWYMQPLTTGRYPESMRTLVGKRLPEFTADETTLLAKSYDFIGLNYYTANYAADIPREDPKPESKLQPSYLTDSNVNYLTQRNGVPIGIPTASQWLYVYPKGFKNILLYLKEKYEDPLIYITENGRSNDVNDETKTLEEARMDIFRIDYHYRHLYYLLSAMSEKVNVKGYFAWSLLDNFEWNTGYTSRFGLNYVDRDDGLKRYDKLSAKWFRKFLERPLKLQG* 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1564 604 ProSitePatterns Glycosyl hydrolases family 1 active site. 500 508 IPR018120 -
Pvu5g1564 604 Gene3D Glycosidases 100 598 - -
Pvu5g1564 604 SUPERFAMILY (Trans)glycosidases 110 597 IPR017853 -
Pvu5g1564 604 PANTHER GLYCOSYL HYDROLASE 112 598 IPR001360 GO:0004553|GO:0005975
Pvu5g1564 604 Pfam Glycosyl hydrolase family 1 116 597 IPR001360 GO:0004553|GO:0005975
Pvu5g1564 604 PRINTS Glycosyl hydrolase family 1 signature 419 433 IPR001360 GO:0004553|GO:0005975
Pvu5g1564 604 PRINTS Glycosyl hydrolase family 1 signature 500 508 IPR001360 GO:0004553|GO:0005975
Pvu5g1564 604 PRINTS Glycosyl hydrolase family 1 signature 524 535 IPR001360 GO:0004553|GO:0005975
Pvu5g1564 604 PRINTS Glycosyl hydrolase family 1 signature 545 562 IPR001360 GO:0004553|GO:0005975
Pvu5g1564 604 PRINTS Glycosyl hydrolase family 1 signature 569 581 IPR001360 GO:0004553|GO:0005975
Pvu5g1564 604 PANTHER GLYCOSIDE HYDROLASE FAMILY 1 PROTEIN 112 598 - -
Pvu5g1564 604 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 122 136 IPR033132 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1564 Pvu-Chr5 37892018 37896059 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1564 113 601 Glycoside Hydrolase AT5G24550 53.550 0.0 530
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1564 - K01188 vra:106778474 781.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1564 5 37892018 37896059 Pvu5g1564 5 37892018 37896059 ECH
Pvu5g1564 5 37892018 37896059 Pvu11g0574 11 4782559 4785827 PCT