Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0574 ATGGCATTCAAGGGCTTTTGCATTCTCAGCCTCATTACTCTTGTTCTTGTGATTAGCAAAACAAATGTTATTTGCACAGAAACTGGTGCAGTCGATCCCATTATTGATGTTGCTTCGCTGAATCGGGACAGTTTCCCTCCAGGTTTCATCTTTGGGGCTGGATCCTCATCATATCAGTTTGAAGGTGGTGCAAGAGAAGGTGGTAGAGGACCAAGTGTGTGGGATACTTTCACCCATAGATATCCAGAAAAGATACTGGACAAAAGCAATGGAGATGTGGCTATCGATACATATCACCGTTACAAGGAAGATGCTAAATTTATGAAGAATATGAACTTGGATTCATACAGATTCTCGATATCTTGGTCCAGAATACTACCAAATGGAAAGCTAAGTGGAGGTATAAATCAAGAAGGAATTGACTATTACAACAATGTCATCAACGAACTATTGGCTAATGGTATAAAACCATTCGTAACTCTTTTCCATTGGGATCTTCCCCAATCTTTAGAAGATGAATATGGTGGCTTCCTAAGTCCTCTCATAATTAAGGATTTTCGGGATTATGCGGAAGTTTGCTTCAAGGAATTTGGAGATAGAGTTAAGCACTGGGTTACATTGAATGAACCTTGGACTTACAGCATTAATGGCTATGCAAATGGAACAATGGCACCAGGACGTTGTTCTGCTTGGGTAAATCCAAATTGCACTGGAGGGGATTCTGGTAGGGAGCCCTATATAGTTTCACACAACCAACTACTTGCTCATGCAGCAGCTGTTCGTGTTTACAGGACCAAGTACCAGGTATCACAAAAAGGTTTGATAGGCATTACCTTAGTAGCTAATTGGATGGTACCATTCTCAGATACCAAATCTGATCAAAAAGCTGCTGAAAGATCAATTGAGTTCATGTATGGATGGTTTATGGATCCATTAACAACAGGAGAATATCCAAAAAGTATGCGATCACTTGTGAAAACACGGTTACCAAAGTTTACTGCGGAGCAAGCTAGGCTACTGATTGGTTCATTTGATTTCATTGGCTTAAACTACTATTCTTCAACATATGCATCTGATGCACCTCATTTAAGCAATGCTCAACCTTACTATATAACTGATTCTTTAGTCACTTCTGAATTTGAGCGTGATGGAAAGCCCATTGGCATAAAGATTGCTTCTGATTGGTTATATGTTTGCCCAAAAGGAATTCGTGATCTTCTATTGTATACTAAAGAAAAGTATAATAATCCTTTGATTTTCATAACTGAAAATGGTGTAAACGAATTTAATAACGATGAAACATTATCTCTAGAGGAATCTCTTTTAGATACTTACAGAATTGATTACTACTATCGTCATCTCTTCTATCTTCGTTCTGCAATTAGGTATGGTGCAAATGTGAAAGGATATTTCGCATGGTCTTTGTTCGACAATTTCGAATGGTCCATGGGTTACACTGTGCGATTTGGAATGACATATGTGGATTACAAAAACAGTTTGAAAAGACACGAAAAACTTTCTGCAATATGGTTCAAGAATTTTCTCAAGAACAAAAATGACACATGTTTTTTATGA 1575 0.379 MAFKGFCILSLITLVLVISKTNVICTETGAVDPIIDVASLNRDSFPPGFIFGAGSSSYQFEGGAREGGRGPSVWDTFTHRYPEKILDKSNGDVAIDTYHRYKEDAKFMKNMNLDSYRFSISWSRILPNGKLSGGINQEGIDYYNNVINELLANGIKPFVTLFHWDLPQSLEDEYGGFLSPLIIKDFRDYAEVCFKEFGDRVKHWVTLNEPWTYSINGYANGTMAPGRCSAWVNPNCTGGDSGREPYIVSHNQLLAHAAAVRVYRTKYQVSQKGLIGITLVANWMVPFSDTKSDQKAAERSIEFMYGWFMDPLTTGEYPKSMRSLVKTRLPKFTAEQARLLIGSFDFIGLNYYSSTYASDAPHLSNAQPYYITDSLVTSEFERDGKPIGIKIASDWLYVCPKGIRDLLLYTKEKYNNPLIFITENGVNEFNNDETLSLEESLLDTYRIDYYYRHLFYLRSAIRYGANVKGYFAWSLFDNFEWSMGYTVRFGMTYVDYKNSLKRHEKLSAIWFKNFLKNKNDTCFL* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0574 524 PANTHER GLYCOSIDE HYDROLASE FAMILY 1 PROTEIN 3 520 - -
Pvu11g0574 524 PANTHER GLYCOSYL HYDROLASE 3 520 IPR001360 GO:0004553|GO:0005975
Pvu11g0574 524 SUPERFAMILY (Trans)glycosidases 35 517 IPR017853 -
Pvu11g0574 524 Pfam Glycosyl hydrolase family 1 42 518 IPR001360 GO:0004553|GO:0005975
Pvu11g0574 524 ProSitePatterns Glycosyl hydrolases family 1 active site. 419 427 IPR018120 -
Pvu11g0574 524 PRINTS Glycosyl hydrolase family 1 signature 343 357 IPR001360 GO:0004553|GO:0005975
Pvu11g0574 524 PRINTS Glycosyl hydrolase family 1 signature 419 427 IPR001360 GO:0004553|GO:0005975
Pvu11g0574 524 PRINTS Glycosyl hydrolase family 1 signature 443 454 IPR001360 GO:0004553|GO:0005975
Pvu11g0574 524 PRINTS Glycosyl hydrolase family 1 signature 464 481 IPR001360 GO:0004553|GO:0005975
Pvu11g0574 524 PRINTS Glycosyl hydrolase family 1 signature 488 500 IPR001360 GO:0004553|GO:0005975
Pvu11g0574 524 Gene3D Glycosidases 25 523 - -
Pvu11g0574 524 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 49 63 IPR033132 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0574 Pvu-Chr11 4782559 4785827 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0574 9 518 Glycoside Hydrolase AT5G44640 55.186 0.0 593
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0574 - K01188 gmx:106794108 899.042
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g0574 11 4782559 4785827 Pvu11g0574 11 4782559 4785827 ECH
Pvu5g1564 5 37892018 37896059 Pvu11g0574 11 4782559 4785827 PCT