Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1562 ATGGCAAATAACGGGTTTCTTTTCTTGGTGTTCTTCGTTCTCTTTACCACATTTTCATCGATTAGTTTTGCACAACAACAATCATCTGTTGTTGAAGTTGTTTCTCTTAATCGTAGCAGTTTTCCCACAGGTTTTGTCTTTGGAACTGCATCTGCGGCTTACCAGTATGAAGGTGCGGCAAATGAAGGTGGAAGAAAACCAAGTGTATGGGATGAATACACCCATAAGCATCCAGAGAGGATAAACGATAGAAGTAATGGAGATGTAGCAGTTGACCAATATCATCGCTATAAGGAAGATGTTCAGATTATGAAAAATATGAATTTGGATGCATACAGATTCTCCATCTCTTGGTCTAGAATCCTACCAAATGGAAAGCGGAGTGGAGGGATAAACCATGAAGGAATCAATTATTACAACAACCTCATTAATAATTTGCTTGCCAATGGTCTACAACCATATGTCACACTTTTTCATTGGGATCTTCCCCAAGCTTTGGAAGAAGAATATAGAGGTTTCCTAAGTCCTCGCATTGTAGGTGATTTTCAGGACTACGCCGAAGTTTGTTTTGAAAATTTTGGAGACCGGGTGAAATATTGGATTACTCTAAATGAGCCATGGTCCTATAGTAATAATGGTTATGCAGTTGGAAGTTTTGTACCAGGTCGATGCTCTAAATGGATAGATTCAACTTGTCTTGGTGGTGACTCAGGAACAGAACCTTACGTAGCTACACATTATCTACTACTTGCTCATGCAGTTGCGGTTGATGTGTACAAAAAAAAGTTTAAGAATTCTCAGAAAGGAATCATTGGCATAACACTTATTACTCATTGGTTTGAACCATATTCAAATAGCCAAGCAGATAAAGATGCTTCTGAACGAGCACTTGACTTCATGTTTGGATGGTACATGGAACCATTGATATCAGGAAAGTATCCATCGAGCATGTGTTCCTTAGTTGGTAAACGATTGCCAAAGTTCTCTAATGAAGAATCAAAACTTCTTGCTGGTTCATTTGATTTTCTTGGACTAAATTATTACACCTCTTACTATGCTGCCAATACATCCAAAAACAACAAACCAAGTTATACCACAGATGCCAATGTCCATCAATTACCTGCTCGCAATGGGGTTTTCATAGGTCCACGGTATGGTGCAGATTGGTTATATATCTACCCCAAAGGAATTAGACAACTATTGCTTTATATCAATAAAAAATACAATAGTCCTTTGATCTACATAACAGAAAATGGAATGGGTGATTTCAATGATCCAACACTATCTGTTAAAGAAATGCTTCAAGATACTTATAGAATTGATTATTTTTATCGTCATCTTTATTATCTACTCTCAGCAATAAGGGATGGCGTACGAGTAAAGGGATATTTTGCATGGTCATTGTTGGACAATTTTGAATGGAAAGATGGTTATAATGTGCGATTTGGACTAAATTATGTAGATTATAAACATGGTTTGCAGCGACATGCCAAACAATCTGCAAAATGGTTCAAAACTTTTCTTCAAAAATATTAG 1536 0.3691 MANNGFLFLVFFVLFTTFSSISFAQQQSSVVEVVSLNRSSFPTGFVFGTASAAYQYEGAANEGGRKPSVWDEYTHKHPERINDRSNGDVAVDQYHRYKEDVQIMKNMNLDAYRFSISWSRILPNGKRSGGINHEGINYYNNLINNLLANGLQPYVTLFHWDLPQALEEEYRGFLSPRIVGDFQDYAEVCFENFGDRVKYWITLNEPWSYSNNGYAVGSFVPGRCSKWIDSTCLGGDSGTEPYVATHYLLLAHAVAVDVYKKKFKNSQKGIIGITLITHWFEPYSNSQADKDASERALDFMFGWYMEPLISGKYPSSMCSLVGKRLPKFSNEESKLLAGSFDFLGLNYYTSYYAANTSKNNKPSYTTDANVHQLPARNGVFIGPRYGADWLYIYPKGIRQLLLYINKKYNSPLIYITENGMGDFNDPTLSVKEMLQDTYRIDYFYRHLYYLLSAIRDGVRVKGYFAWSLLDNFEWKDGYNVRFGLNYVDYKHGLQRHAKQSAKWFKTFLQKY* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1562 511 SUPERFAMILY (Trans)glycosidases 31 509 IPR017853 -
Pvu5g1562 511 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 45 59 IPR033132 -
Pvu5g1562 511 Pfam Glycosyl hydrolase family 1 39 509 IPR001360 GO:0004553|GO:0005975
Pvu5g1562 511 Gene3D Glycosidases 20 511 - -
Pvu5g1562 511 PRINTS Glycosyl hydrolase family 1 signature 339 353 IPR001360 GO:0004553|GO:0005975
Pvu5g1562 511 PRINTS Glycosyl hydrolase family 1 signature 413 421 IPR001360 GO:0004553|GO:0005975
Pvu5g1562 511 PRINTS Glycosyl hydrolase family 1 signature 436 447 IPR001360 GO:0004553|GO:0005975
Pvu5g1562 511 PRINTS Glycosyl hydrolase family 1 signature 457 474 IPR001360 GO:0004553|GO:0005975
Pvu5g1562 511 PRINTS Glycosyl hydrolase family 1 signature 481 493 IPR001360 GO:0004553|GO:0005975
Pvu5g1562 511 PANTHER GLYCOSIDE HYDROLASE FAMILY 1 PROTEIN 3 510 - -
Pvu5g1562 511 PANTHER GLYCOSYL HYDROLASE 3 510 IPR001360 GO:0004553|GO:0005975
Pvu5g1562 511 ProSitePatterns Glycosyl hydrolases family 1 active site. 413 421 IPR018120 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1562 Pvu-Chr5 37870868 37876006 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1562 9 510 Glycoside Hydrolase AT5G24550 53.543 0.0 563
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1562 - K01188 gmx:100811884 725.702
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1562 5 37870868 37876006 Pvu5g1562 5 37870868 37876006 ECH
Pvu5g1562 5 37870868 37876006 Pvu11g0575 11 4791882 4796295 PCT