Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1561 CTTTCTCTCAATCGAAGCAGTTTTCCCAAAGGCTTCATTTTTGGAACTGCATCTGCGGCTTACCAGTATGAAGGTGCGGCAAACGAAGGTGGAAGAAAACCAAGTATATGGGATGCATACACCGACAAATATCCAGATAGGATAAACAATGGAAGTAATGGAGATGTAGCAGTTGACCAATATCATCGCTACAAGGAAGATATTCAGATAATGAAAAATATGAATCTGGATGCATACAGATTCTCCATCTCTTGGTCAAGAGTCCTACCAAATGGAAAGCTTAGTGGAGGCATAAACCCAAAAGGAATCAAATATTACAACAACCTCATCGATAATTTGCTAGCCAACGGTCTAACACCATATGTCACACTTTTTCACTGGGATCTTCCCCAAGCTTTGGAAGATGAATACGGAGGCTTCTTAAGTCGTCGCATTGTAGGTGACTTTCGAGATTACGCAGAAGTTTGTTTCAAATACTTTGGAGACAGAGTGAAACATTTGATTACTCTAAATGAGCCATTGACCTACAGTAGTACTGGTTATGCAGTTGGGAGTTTTGCACCAGGTCGATGCTCTAAATGGCTAGATTCAACTTGTCTTGGTGGTGACTCAGGAACAGAACCTTATATAGTTTCACATTACCAATTACTTGCTCATGCAGCTGCCGTAGATGTCTACAAGAAAAAGTTTAAGAATACACAAAAAGGAATAATTGGCATAACACTTAATTCTAATTGGTTCGAACCATATTCAAATAGCCAAGAGGATGAAGAAGCTTCTGAACGATCACTTGACTTCGCATTTGGATGGTACATGGAACCATTGACATCAGGAAAGTATCCAAAGAGCATGCGTACACTAGTTGGTAAACGATTGCCAAAGTTCTCTAAAAAAGAAGCAAAACTTCTTGCTGGTTCAATGGATTTTCTTGGACTAAACTATTACACCACTAACTATGCTACCAATGCATCCAAATCCAACAAACCAAGTTATACTACAGATTCTAATGTCCATGCATTAACTGTTCGCAACGGGATTCCTATTGGTCCACAGTTCGGTCCAAGTTGGTTATTTATCTACCCCAAAGGATTAAGAAAATTATTGCTTTATACCAATACAAAGTACAACAATCCTTTGATCTACATAACAGAAAATGGCATGGGTGATATTAGTACCGATCTAACATTATCCGTAGAAGAAATGCTTCAAGATACTTATAGAATTGACTATTATTACCGTCATCTTTATTATCTACTCTCAGCAATTAGGGATGGCGTCCGAGTAAAGGGATATTTTGCATGGTCATTGTTGGACAATTTTGAATGGAAAGATGGTTATAATGTGCGATTTGGACTAAATTTTGTTGATTATAAAAATGGTTTGAAGCGACATGCCAAACAATCTGCAAAATGGTTCAAAGCTTTTCTTCAGAAAAATTAG 1440 0.3792 LSLNRSSFPKGFIFGTASAAYQYEGAANEGGRKPSIWDAYTDKYPDRINNGSNGDVAVDQYHRYKEDIQIMKNMNLDAYRFSISWSRVLPNGKLSGGINPKGIKYYNNLIDNLLANGLTPYVTLFHWDLPQALEDEYGGFLSRRIVGDFRDYAEVCFKYFGDRVKHLITLNEPLTYSSTGYAVGSFAPGRCSKWLDSTCLGGDSGTEPYIVSHYQLLAHAAAVDVYKKKFKNTQKGIIGITLNSNWFEPYSNSQEDEEASERSLDFAFGWYMEPLTSGKYPKSMRTLVGKRLPKFSKKEAKLLAGSMDFLGLNYYTTNYATNASKSNKPSYTTDSNVHALTVRNGIPIGPQFGPSWLFIYPKGLRKLLLYTNTKYNNPLIYITENGMGDISTDLTLSVEEMLQDTYRIDYYYRHLYYLLSAIRDGVRVKGYFAWSLLDNFEWKDGYNVRFGLNFVDYKNGLKRHAKQSAKWFKAFLQKN* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1561 479 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 12 26 IPR033132 -
Pvu5g1561 479 Pfam Glycosyl hydrolase family 1 6 479 IPR001360 GO:0004553|GO:0005975
Pvu5g1561 479 Gene3D Glycosidases 1 479 - -
Pvu5g1561 479 ProSitePatterns Glycosyl hydrolases family 1 active site. 380 388 IPR018120 -
Pvu5g1561 479 SUPERFAMILY (Trans)glycosidases 4 477 IPR017853 -
Pvu5g1561 479 PANTHER GLYCOSIDE HYDROLASE FAMILY 1 PROTEIN 3 478 - -
Pvu5g1561 479 PANTHER GLYCOSYL HYDROLASE 3 478 IPR001360 GO:0004553|GO:0005975
Pvu5g1561 479 PRINTS Glycosyl hydrolase family 1 signature 306 320 IPR001360 GO:0004553|GO:0005975
Pvu5g1561 479 PRINTS Glycosyl hydrolase family 1 signature 380 388 IPR001360 GO:0004553|GO:0005975
Pvu5g1561 479 PRINTS Glycosyl hydrolase family 1 signature 404 415 IPR001360 GO:0004553|GO:0005975
Pvu5g1561 479 PRINTS Glycosyl hydrolase family 1 signature 425 442 IPR001360 GO:0004553|GO:0005975
Pvu5g1561 479 PRINTS Glycosyl hydrolase family 1 signature 449 461 IPR001360 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1561 Pvu-Chr5 37863713 37866505 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1561 3 479 Glycoside Hydrolase AT5G24550 55.901 0.0 554
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1561 - K01188 gmx:100811884 706.057
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1561 5 37863713 37866505 Pvu5g1561 5 37863713 37866505 ECH
Pvu5g1561 5 37863713 37866505 Pvu11g0576 11 4799515 4802594 PCT