Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0576 ATGAAGCATTCACAGAAACAGCATCAAACGTCTAAGCAGAATAACATGGCCTTCTACAGCTCTCTCTCTCTGTGCCTCTTTGCTCTTCTTCTTCTTAGATCTTCTAAAGTTACATGCGAAGAAGCAGTTTCAGTTTCACCAACTATTGACATTTCACTCAATCGGAACTCTTTCCCTCAAGGCTTCATCTTTGGAGCTGGATCTTCCTCCTACCAGTTCGAAGGTGCAGCAATGGAAGGTGGTAGAGGAGCAAGTGTATGGGATACTTTCACTCATAAATATCCAGGTAAGATCCAGGATAGAAGCAACGGAGACGTGGCCATCGACTCATATCATCTTTACAAGGATGATGTTGGAATGATGAAGGATGTGAATTTGGATTCATACAGATTTTCCATATCTTGGTCAAGGATTCTACCCAAAGGAAAGCTAAGTGGAGGTATAAATCAAGAAGGAATAAATTATTACAACAACCTTATCAATGAGTTACTTGCTAATGGTATAAAACCATTTGTGACTATTTTTCACTGGGATCTTCCCCAAGCACTAGAAGACGAGTATGGTGGTTTTTTAAGTCCACTAATAGTGAAGGATTTTCGAGATTATGCAGAACTTTGCTTTAAGGAATTTGGTGATAGGGTGAAGCATTGGGTTACATTGAATGAGCCATGGAGTTATAGTCAAAATGGCTATGCAAATGGAGAAATGGCACCAGGTCGTTGTTCTGCATGGATGAATTCAAATTGCACTGGTGGTGATTCTGGAACGGAACCCTATTTGGTTACACATCACCAACTTCTTGCTCATGCAGCAGCTGTTCGTGTCTACAAGACTAAGTATCAGACATCTCAGAAGGGTGTGATAGGCATAACCTTGGTAGTTAATTGGTATTTGCCACTCAGAGATACCAAATCTGATCAAAAGGCTGCTGAAAGAGCAATAGACTTCATGTATGGATGGTTTATGGATCCATTAACTTCTGGAGACTATCCAAAAAGTATGAGATCACTTGTGAGAACAAGATTGCCAAAGTTCACCACAGAGCAAGCTAGATTACTTGTTGGTTCATTCGATTTTATTGGTCTAAACTATTACTCTACAGCATATGCCTCTGATGCACCTCAACTAAGCAATGTCAACCCTAGCTACATAACCGATTCTCTTGTCACTGCTGCATTTGAACGCGATGGAAAACCTATTGGAATAAAGATTGCTTCTGATTGGTTATATGTTTATCCAAGAGGAATTCGTGATCTTTTATTATATACCAAAGAAAAGTACAATAATCCTTTGATTTTCATCACAGAAAATGGTGTAAATGAGTATAATGAACCCTCCTTATCACTTGAAGAATCTCTTATGGATACTTTCAGAATTGATTATCATTATCGTCATCTCTATTATATTCTATCGGCAATTAGGAATGGCGCAAATGTAAAGGGATATTATGTATGGTCTTTCTTCGACAATTTTGAGTGGTCTTCAGGCTATACATCACGATTCGGAATGGTCTTCATAGATTATAAAAATGGTTTGAAAAGATATCAAAAGCTCTCAGCAATGTGGTACAAGAACTTCCTCAAGAAAGAAACAAGACTTTATGGCTCTAGTAAATGA 1617 0.384 MKHSQKQHQTSKQNNMAFYSSLSLCLFALLLLRSSKVTCEEAVSVSPTIDISLNRNSFPQGFIFGAGSSSYQFEGAAMEGGRGASVWDTFTHKYPGKIQDRSNGDVAIDSYHLYKDDVGMMKDVNLDSYRFSISWSRILPKGKLSGGINQEGINYYNNLINELLANGIKPFVTIFHWDLPQALEDEYGGFLSPLIVKDFRDYAELCFKEFGDRVKHWVTLNEPWSYSQNGYANGEMAPGRCSAWMNSNCTGGDSGTEPYLVTHHQLLAHAAAVRVYKTKYQTSQKGVIGITLVVNWYLPLRDTKSDQKAAERAIDFMYGWFMDPLTSGDYPKSMRSLVRTRLPKFTTEQARLLVGSFDFIGLNYYSTAYASDAPQLSNVNPSYITDSLVTAAFERDGKPIGIKIASDWLYVYPRGIRDLLLYTKEKYNNPLIFITENGVNEYNEPSLSLEESLMDTFRIDYHYRHLYYILSAIRNGANVKGYYVWSFFDNFEWSSGYTSRFGMVFIDYKNGLKRYQKLSAMWYKNFLKKETRLYGSSK* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0576 538 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 62 76 IPR033132 -
Pvu11g0576 538 ProSitePatterns Glycosyl hydrolases family 1 active site. 432 440 IPR018120 -
Pvu11g0576 538 PRINTS Glycosyl hydrolase family 1 signature 356 370 IPR001360 GO:0004553|GO:0005975
Pvu11g0576 538 PRINTS Glycosyl hydrolase family 1 signature 432 440 IPR001360 GO:0004553|GO:0005975
Pvu11g0576 538 PRINTS Glycosyl hydrolase family 1 signature 455 466 IPR001360 GO:0004553|GO:0005975
Pvu11g0576 538 PRINTS Glycosyl hydrolase family 1 signature 476 493 IPR001360 GO:0004553|GO:0005975
Pvu11g0576 538 PRINTS Glycosyl hydrolase family 1 signature 500 512 IPR001360 GO:0004553|GO:0005975
Pvu11g0576 538 SUPERFAMILY (Trans)glycosidases 53 528 IPR017853 -
Pvu11g0576 538 PANTHER GLYCOSIDE HYDROLASE FAMILY 1 PROTEIN 23 534 - -
Pvu11g0576 538 PANTHER GLYCOSYL HYDROLASE 23 534 IPR001360 GO:0004553|GO:0005975
Pvu11g0576 538 Gene3D Glycosidases 43 529 - -
Pvu11g0576 538 Pfam Glycosyl hydrolase family 1 55 530 IPR001360 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0576 Pvu-Chr11 4799515 4802594 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0576 22 532 Glycoside Hydrolase AT5G44640 54.102 0.0 588
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0576 - K01188 gmx:100784723 946.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g0576 11 4799515 4802594 Pvu11g0576 11 4799515 4802594 ECH
Pvu5g1561 5 37863713 37866505 Pvu11g0576 11 4799515 4802594 PCT