Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1479 ATGGGTCAGACCCTTAGTTGCACGCCCAACCATGACCACGGCCTCTTCACCGCCGTGCAACAGGGTGACCTCCAAATTGTCACCACTCTCTTAGAGGCCGACCCCTCTCTCTTCCACCAAACCACTCTCTACGATCGCCACTCTCCGCTTCATATTGCCGCAGCCAATGCCCAGATCGAGATTCTGTCTAGGCTTTTGGATGGATCTCTTAACCCAGATGTTTTGAATCGCCACAAACAGACTCCGCTTATGTTGGCAGCAATGCACGGGAACATCGCGTGTGTCGAGAAGCTTCTTCAAGCCGGAGCTAATGTGTTAATGTTTGATACCATTTCCGGGAGAACCTGCTTACACTATGCCGCTTACTACGGCCATTCTTCTTGCCTTAAAGCTATTCTTTCTGCTGCTCAATCTAGTCCGGTGGCTGCTTCTTGGGGGTTTGCACGGTTTGTGAATATTAGAGATGGAAAGGGTGCAACGCCATTGCACTTGGCGGCTCGTCAGAGACGGTCTGAATGTGTACATATTCTGTTGGACAGTGGAGCCCTTGTTTGTGCTTCAACCGGTGGATATGGCTGTCCTGGGAGTACTCCGCTTCATCTAGCAGCTAGAGGGGGATCTCTGGATTGCATTCGTGAATTGTTGGCATGGGGTGCGGATCGTCTTCATCGCGATGCATCTGGGCGGATACCATATATGGTTGCTCTGAAACACAAACATGGAGCCTGTGCATCATTGCTGAATCCTACATCTGCAGAACCTCTTGTCTGGCCGTCTCCCTTGAAGTTCATCAGTGAGCTTAATCCTGAAGCTAAAGCTTTATTGGAACAGGCGTTGATGGATGCAAACAGAGAAAGGGAGAAAAACATATTGAAAGGGAGCGCTTACTCTCTTCCATCCCCATCACATTCTGATGGGGCAACTGATGATGTGTCTGAGGTTAGTGAGTCGGAGTTATGTTGCATCTGCTTTGAGCAGGCATGCACAATCGAAGTTCAGAGCTGTGGGCACCAGATGTGTGCACAATGCACACTAGCCCTGTGTTGCCACAACAAGCCCAACCCTGCCACAGCCTGTCTCACTCCACCAGTTTGTCCATTCTGTCGAAGCACCATTGCAAGACTGGTGGTTGTGAAGACAGAATGCCATGATGAAACTGATCTAGACAGTGTTGACATCAACTGTTCCAAGCTGAGCAAGGCATCAAAGAGATTCAGAAACTTGAATGACAGTGGTAGCAGCAGCTTCAAGGGTCTATCCAGTGTTAGTTCATTCGGGAAGTTGGGTGGCCGCAGCTCTGGAAGGATTGCTGCTGAGTGGGTCGATAAACAGTGA 1335 0.4981 MGQTLSCTPNHDHGLFTAVQQGDLQIVTTLLEADPSLFHQTTLYDRHSPLHIAAANAQIEILSRLLDGSLNPDVLNRHKQTPLMLAAMHGNIACVEKLLQAGANVLMFDTISGRTCLHYAAYYGHSSCLKAILSAAQSSPVAASWGFARFVNIRDGKGATPLHLAARQRRSECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSLDCIRELLAWGADRLHRDASGRIPYMVALKHKHGACASLLNPTSAEPLVWPSPLKFISELNPEAKALLEQALMDANREREKNILKGSAYSLPSPSHSDGATDDVSEVSESELCCICFEQACTIEVQSCGHQMCAQCTLALCCHNKPNPATACLTPPVCPFCRSTIARLVVVKTECHDETDLDSVDINCSKLSKASKRFRNLNDSGSSSFKGLSSVSSFGKLGGRSSGRIAAEWVDKQ* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1479 444 Pfam Ankyrin repeat 195 225 IPR002110 GO:0005515
Pvu5g1479 444 Gene3D - 198 251 IPR036770 -
Pvu5g1479 444 ProSiteProfiles Ankyrin repeat profile. 157 189 IPR002110 GO:0005515
Pvu5g1479 444 PANTHER HOMEOBOX PROTEIN WARIAI 1 444 - -
Pvu5g1479 444 SUPERFAMILY RING/U-box 315 374 - -
Pvu5g1479 444 ProSiteProfiles Zinc finger RING-type profile. 320 369 IPR001841 -
Pvu5g1479 444 ProSiteProfiles Ankyrin repeat profile. 194 226 IPR002110 GO:0005515
Pvu5g1479 444 ProSiteProfiles Ankyrin repeat region circular profile. 78 105 - -
Pvu5g1479 444 ProSiteProfiles Ankyrin repeat region circular profile. 45 77 - -
Pvu5g1479 444 ProSiteProfiles Ankyrin repeat profile. 78 110 IPR002110 GO:0005515
Pvu5g1479 444 ProSiteProfiles Ankyrin repeat region circular profile. 157 182 - -
Pvu5g1479 444 Pfam Ankyrin repeats (3 copies) 112 183 IPR002110 GO:0005515
Pvu5g1479 444 Pfam Ankyrin repeats (3 copies) 15 109 IPR002110 GO:0005515
Pvu5g1479 444 ProSiteProfiles Ankyrin repeat profile. 45 77 IPR002110 GO:0005515
Pvu5g1479 444 SMART ANK_2a 194 223 IPR002110 GO:0005515
Pvu5g1479 444 SMART ANK_2a 45 74 IPR002110 GO:0005515
Pvu5g1479 444 SMART ANK_2a 157 186 IPR002110 GO:0005515
Pvu5g1479 444 SMART ANK_2a 227 256 IPR002110 GO:0005515
Pvu5g1479 444 SMART ANK_2a 10 39 IPR002110 GO:0005515
Pvu5g1479 444 SMART ANK_2a 78 107 IPR002110 GO:0005515
Pvu5g1479 444 SMART ANK_2a 112 142 IPR002110 GO:0005515
Pvu5g1479 444 Gene3D - 6 144 IPR036770 -
Pvu5g1479 444 SUPERFAMILY Ankyrin repeat 9 250 IPR036770 -
Pvu5g1479 444 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 302 378 IPR013083 -
Pvu5g1479 444 ProSiteProfiles Ankyrin repeat region circular profile. 194 220 - -
Pvu5g1479 444 PANTHER UBIQUITIN-PROTEIN LIGASE XBAT31, PUTATIVE-RELATED 1 444 - -
Pvu5g1479 444 Gene3D - 145 197 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1479 Pvu-Chr5 37201519 37204881 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1479 14 225 Miscellaneous Gene Families AT3G12360 31.944 2.06e-16 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1479 - - gmx:100786708 850.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1479 5 37201519 37204881 Pvu5g1479 5 37201519 37204881 ECH
Pvu5g1479 5 37201519 37204881 Pvu11g0663 11 5607995 5611541 PCT