Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0663 ATGGGTCAGGGGCTGAGTTGCAGAGGGAGCCATGAGCATGGCCTATTTCGTGCTGTGCAGCATGGGGACCTAGACACTGTAGCAGCTTTGTTACACACACACCCTTCTCTCATGAACCACACCACTGTCTATGATCACCACTCCCCTCTTCATATTGCCGCTGCTAATGGCCAGATCCAGGTTTTATCTTGGCTTTTGGATGGATCTGTGAATCCGGATGCGTTGAATCGCCAAAAGCAGACACCGCTTATGTTGGCTGCAATGCACGGGAAGATCGCCTGTGTGGAAAAGCTCCTCGAAGCTGGTGCTAATGTATTAATGTTTGATGCGTGTTATGGAAGGACCTGCTTGCACTATGCAGCTTACTATGGCCATTCTTCTTGCCTTAAGGCAATTCTCTCTGCTGCTCAATCTAGTCCTGTGGCTGCTTCTTGGGGGTTTGCTCGGTTTGTGAATATTAGAGATGGAAGGGGTGCAACACCTTTGCACTTGGCAGCCCGTCAAAGACGGCCTGAATGTGTACATATTCTATTGTACAGTGGAGCTCTTGTTTCTGCTTCAACAGGGAGATATGGCTGTCCTGGGAGCACTCCTCTTCATCTTGCAGCCAAAGGGGGGTCCTTGGATTGCATCAGGGAACTGTTGGCATGGGGTGCAGATCGCCTTCAACGTGATGCCTCTGGGCGTATACCTTATGTAGTTGCTCTTAAACATAGACACAACGCATGTGCAGCATTGCTGAATCTTTCGTCTGCTGAGCCTCTTGTATGGCCATCATCTTTGAAGGTGATCAGTGAGCTTAATCCAGACGCCAAAGAATTATTAGAGCAGGCCCTGATGAACGCAAACAGGGAAAGGGAGAAAAACATATTGAAAGGGAGTGATTACTCTCTTCCATCTCCAGCACACTCTGATGGGACAGATGACAACATTTCTGAGGTTAGCGAGACGGAATTATGTTGCATCTGCTTTGAGCAAGTGTGCACAATTGAGGTGCAAGACTGTGGTCACCAGATGTGTGCACAATGCACACTAGCCCTGTGTTGTCACAACAAGCCTAACCCTTCTACTTCTCGTATTGTCCCACCAGTTTGTCCATTCTGCAGAAGCAGCATAGCAAGATTAGTGGTTGTGAAAAAAGAAAGCCTTCATGACATTGATCAAGATGGTGTTGACATTACTTTTTCCAAGCCTAGCAAGTCAAGGAAAACCCGAACCATGAACGAGGGTGGCAGCAGCAGCATCAAGGGATTATCAAGTGTGAACTCATTTGGAAAGATGGGTGGCCGCAGCTCCGGAAAAATTGCTGCTGAAAATGAGTGGGAAGATGATAAACAACAGTGA 1344 0.4777 MGQGLSCRGSHEHGLFRAVQHGDLDTVAALLHTHPSLMNHTTVYDHHSPLHIAAANGQIQVLSWLLDGSVNPDALNRQKQTPLMLAAMHGKIACVEKLLEAGANVLMFDACYGRTCLHYAAYYGHSSCLKAILSAAQSSPVAASWGFARFVNIRDGRGATPLHLAARQRRPECVHILLYSGALVSASTGRYGCPGSTPLHLAAKGGSLDCIRELLAWGADRLQRDASGRIPYVVALKHRHNACAALLNLSSAEPLVWPSSLKVISELNPDAKELLEQALMNANREREKNILKGSDYSLPSPAHSDGTDDNISEVSETELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPSTSRIVPPVCPFCRSSIARLVVVKKESLHDIDQDGVDITFSKPSKSRKTRTMNEGGSSSIKGLSSVNSFGKMGGRSSGKIAAENEWEDDKQQ* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0663 447 Gene3D - 9 143 IPR036770 -
Pvu11g0663 447 ProSiteProfiles Ankyrin repeat profile. 78 110 IPR002110 GO:0005515
Pvu11g0663 447 ProSiteProfiles Zinc finger RING-type profile. 320 369 IPR001841 -
Pvu11g0663 447 ProSiteProfiles Ankyrin repeat region circular profile. 45 77 - -
Pvu11g0663 447 ProSiteProfiles Ankyrin repeat region circular profile. 78 105 - -
Pvu11g0663 447 Gene3D - 144 197 IPR036770 -
Pvu11g0663 447 ProSiteProfiles Ankyrin repeat profile. 157 189 IPR002110 GO:0005515
Pvu11g0663 447 SUPERFAMILY RING/U-box 314 374 - -
Pvu11g0663 447 ProSiteProfiles Ankyrin repeat region circular profile. 157 182 - -
Pvu11g0663 447 SMART ANK_2a 10 39 IPR002110 GO:0005515
Pvu11g0663 447 SMART ANK_2a 45 74 IPR002110 GO:0005515
Pvu11g0663 447 SMART ANK_2a 157 186 IPR002110 GO:0005515
Pvu11g0663 447 SMART ANK_2a 194 223 IPR002110 GO:0005515
Pvu11g0663 447 SMART ANK_2a 112 142 IPR002110 GO:0005515
Pvu11g0663 447 SMART ANK_2a 227 256 IPR002110 GO:0005515
Pvu11g0663 447 SMART ANK_2a 78 107 IPR002110 GO:0005515
Pvu11g0663 447 Pfam Ankyrin repeats (many copies) 194 232 IPR002110 GO:0005515
Pvu11g0663 447 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 303 387 IPR013083 -
Pvu11g0663 447 PANTHER UBIQUITIN-PROTEIN LIGASE XBAT31, PUTATIVE-RELATED 1 442 - -
Pvu11g0663 447 ProSiteProfiles Ankyrin repeat profile. 194 226 IPR002110 GO:0005515
Pvu11g0663 447 Coils Coil 272 292 - -
Pvu11g0663 447 ProSiteProfiles Ankyrin repeat region circular profile. 194 220 - -
Pvu11g0663 447 MobiDBLite consensus disorder prediction 398 447 - -
Pvu11g0663 447 Pfam Ankyrin repeats (3 copies) 112 184 IPR002110 GO:0005515
Pvu11g0663 447 Pfam Ankyrin repeats (3 copies) 15 109 IPR002110 GO:0005515
Pvu11g0663 447 PANTHER HOMEOBOX PROTEIN WARIAI 1 442 - -
Pvu11g0663 447 SUPERFAMILY Ankyrin repeat 15 247 IPR036770 -
Pvu11g0663 447 MobiDBLite consensus disorder prediction 405 427 - -
Pvu11g0663 447 ProSiteProfiles Ankyrin repeat profile. 45 77 IPR002110 GO:0005515
Pvu11g0663 447 Gene3D - 198 251 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0663 Pvu-Chr11 5607995 5611541 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0663 36 247 Miscellaneous Gene Families AT5G02620 27.273 2.08e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0663 - - gmx:100800611 873.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1479 5 37201519 37204881 Pvu11g0663 11 5607995 5611541 PCT