Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1417 ATGGGAAGCAGCGTCACCCTTTTGATCTTATTGTTTGTTCTTTGCCATGGCGTCACAGTAACAATGGGGCGGTTCTGGAGTACAGAGGGGGAAGAGAGAAAAGAGGATCCTCCAACCCCAGACAATTTGTTCTTGATGAAGAAATCCAAACTCGTGATCAAAACCAGCGCTGGGAAGATGCGAGTGTTTGAAAGTTATGGTGGTAAAGCTTCGGAGAGGCACTTGCACATTGGTTTCATTACTATGGAACCAAAGTCCCTTTTCATTCCTCAGTACATTGATTCCACTTTGATCATATTCGTGCGTTCAGGGGAAGCAAAGTTGGGATTCGTAAACAAAGGCAAACTGGCGCGAAGACGTTTAAAGATGGGAGACGTATATCAAATTCCAGCTGGTTCTGCATTCTACATAGTTAACATTGAAGGTGGCCAAAAGCTTCACATTATCTGCAGCATTGAACCCTCTGAAAGCTTGGGAGATGATGTTTTCCAGTCCTTCTATATTGGAGGTGGACTTCATCCAGCCCCAGTACTTGCTGGATTCGAGCATGAAATCCTTGAAGCTTCTTTTAACGTATCTGGAGAAGAGTTAAGAAAATTCTTCACTAAGAAACACGGGGGGGCGATTGTGCATGTGAGAGATTCACATGCCACAAGCATATGGACCGAGTTCCTTCAGCTTGAGGAGGAAGAAAAACTGCAACACCTGAATGAGATGGTACAGCAACGACAAGAAAACGTGGAAATGGAGAAGGAGGATGAGGATGAGGAATCTGGTGATGAAGAAGAGCAACAAACAAGTTGGTCATGGAGGAAGCTCTTGGAATCTGTATTTGGGGAAGAGAACAAGAACACGAGGGAGATGATTACTAAAAGACCCCCTCGCACTTACAACCTTTATGACAGAAAACCAGATTTTCAAAACACTTATGGTTGGAGCATTGCTGTAGATGGCTCTCACTATCATCCACTCAGAAGTTCTGGCGTTGGCATTTATCATGTCAATCTCTCAGCTGGATCAATGATGGCACCCCATGTGAATCCAAGGGCAACAGAATATGGCATAGTGCTAAAAGGTTCAGGTAGGATCCAAGTAGTGTTTCCAGATGGAAGCAATGCAATGGACACTCAGATAAAAGAAGGGGATGTGTTCTTCATTCCAAGGTACTATGCCTTCTGCCAAATAGCATCAAATGGTGAACCACTAGAGTTCTTTGGCTTCACCACCTCGGCTCAGAAGAATAGGCCAATATTTCTGGTGGGAGCCACGTCCCTCATAAGGACCATGATGGGGCCTGAGCTAGCAACTGCATTTGGGGTGAGTGAAAAGACCATGAGGAGCATGGCTAAGGCACAACACGAAGCTGTGATTCTACCAGCACCACATCAAGAGGTGCAGGTGGTGGTGGATGCAGTTCCAAAGCTTTCAAAGGAATGA 1437 0.4523 MGSSVTLLILLFVLCHGVTVTMGRFWSTEGEERKEDPPTPDNLFLMKKSKLVIKTSAGKMRVFESYGGKASERHLHIGFITMEPKSLFIPQYIDSTLIIFVRSGEAKLGFVNKGKLARRRLKMGDVYQIPAGSAFYIVNIEGGQKLHIICSIEPSESLGDDVFQSFYIGGGLHPAPVLAGFEHEILEASFNVSGEELRKFFTKKHGGAIVHVRDSHATSIWTEFLQLEEEEKLQHLNEMVQQRQENVEMEKEDEDEESGDEEEQQTSWSWRKLLESVFGEENKNTREMITKRPPRTYNLYDRKPDFQNTYGWSIAVDGSHYHPLRSSGVGIYHVNLSAGSMMAPHVNPRATEYGIVLKGSGRIQVVFPDGSNAMDTQIKEGDVFFIPRYYAFCQIASNGEPLEFFGFTTSAQKNRPIFLVGATSLIRTMMGPELATAFGVSEKTMRSMAKAQHEAVILPAPHQEVQVVVDAVPKLSKE* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1417 478 CDD cupin_7S_vicilin-like_C 304 455 - -
Pvu5g1417 478 Gene3D Jelly Rolls 32 222 IPR014710 -
Pvu5g1417 478 Coils Coil 225 257 - -
Pvu5g1417 478 Pfam Cupin 297 445 IPR006045 -
Pvu5g1417 478 Pfam Cupin 50 150 IPR006045 -
Pvu5g1417 478 SMART Cupin_1_3 297 446 IPR006045 -
Pvu5g1417 478 SMART Cupin_1_3 55 198 IPR006045 -
Pvu5g1417 478 SUPERFAMILY RmlC-like cupins 54 455 IPR011051 -
Pvu5g1417 478 Gene3D Jelly Rolls 289 461 IPR014710 -
Pvu5g1417 478 MobiDBLite consensus disorder prediction 242 267 - -
Pvu5g1417 478 PANTHER OS03G0336100 PROTEIN-RELATED 1 463 - -
Pvu5g1417 478 MobiDBLite consensus disorder prediction 249 263 - -
Pvu5g1417 478 CDD cupin_7S_vicilin-like_N 52 212 - -
Pvu5g1417 478 PANTHER OS03G0336100 PROTEIN 1 463 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1417 Pvu-Chr5 36545036 36547446 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1417 36 458 Miscellaneous Gene Families AT2G18540 26.941 7.45e-45 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1417 - - gmx:100818796 694.501
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1417 5 36545036 36547446 Pvu5g1417 5 36545036 36547446 ECH
Pvu5g1417 5 36545036 36547446 Pvu11g0747 11 6564143 6567180 PCT