Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1392 ATGTACAAAAACCAGCTTCAAGAGCTGGCCCAGCGGAGCTGCTTCAACCTGCCTTCATACACGTGCATTCGGGAAGGTCCCGATCACGCGCCTAGGTTCAAGGCCACCGTTAACTTTAACGGCGAGATCTTCGAGAGCCCTCACTACTGCTCCACTCTCCGTCAGGCTGAACACTCCGCCGCCGAAGTCGCTCTCAATTCCCTCTCCCACCGTGGCCCCTCGCACTCCCTCGCCGCCAAGATCCTCGATGAGACTGGAGTGTACAAAAACCTTCTACAGGAAATTGCGCAAAGGGTAGGAGCCCCATTGCCTCATTACACAACGTACAGGTCTGGCCTAGGACATTTACCTGTTTTTACGGGGATAGTAGAGCTTGCTGGAATCTCATTTACCGGAGAACCTGCAAAGAATAAGAAACAAGCTGAGAAAAATGCAGCTATGGCAGCTTGGTCGGCTTTGAAACAATTGGCAAAAGAGACTGCAAGCTCCTCAACGGAACCAGAGAACAATGATGAACTGGAACAGATCACAATAGCGCGGGCTTTACTGAATTACCGTTTGAAGGAAAAGATGACAATGTCTAATCCAAGCACTCCAATTCCATTTCATAAAAGGTTTCAGATTCAAAATCCCAGACCCATCAGTTCTCAACCACCGCCAGCCACTTCATCAAAAATCCTTCCCCTAATTTGCCAAAGGACTGCACCTCGATGTAAGCCATCAATGGCAAAAGCAAATGAAAGTGTTCGAAGCAGGCATCCACAGGCTGCAATCACCAGTGACAATTCCACCCTACCACCACAATCCTGTGCTCTAGAAAGTCGAGGGATCCGTCCCCTTAGGTTCCCTGCAGTAGGAGCAGTACCTTATGTTCCTATTCGACAAATAAGATCATCTTGCCAGGGGATTGCTCCTGCAGTGACTATAAGGACTGTAGTACCAGCCTTTGCTGCGCCACCTTGTCCACCGCCTGCCTCAGTGCCACCCCATCCTGTAATACGGGCTTCTCCAGTGCGAGTTGCTCCTGCAGTCAATATTCGGCAAGCTGTTCCCGTATATGCTGCTCCACCTCCAAGAAGGGATGAACCTGCCCCCATCCCAAAGGATCTACCAACTGCTAGTGTCTCTTGCCAACAAGATAAACAACCAATTAAATTTCAAGAAATGGACAAGCCTGAGAACATTCCACCAGAATCGGAGACTATGCCTATTTTGGAGCAGCTGAAAATTTGA 1233 0.4931 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALNSLSHRGPSHSLAAKILDETGVYKNLLQEIAQRVGAPLPHYTTYRSGLGHLPVFTGIVELAGISFTGEPAKNKKQAEKNAAMAAWSALKQLAKETASSSTEPENNDELEQITIARALLNYRLKEKMTMSNPSTPIPFHKRFQIQNPRPISSQPPPATSSKILPLICQRTAPRCKPSMAKANESVRSRHPQAAITSDNSTLPPQSCALESRGIRPLRFPAVGAVPYVPIRQIRSSCQGIAPAVTIRTVVPAFAAPPCPPPASVPPHPVIRASPVRVAPAVNIRQAVPVYAAPPPRRDEPAPIPKDLPTASVSCQQDKQPIKFQEMDKPENIPPESETMPILEQLKI* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1392 410 Pfam Double-stranded RNA binding motif 88 152 IPR014720 -
Pvu5g1392 410 Pfam Double-stranded RNA binding motif 2 68 IPR014720 -
Pvu5g1392 410 PANTHER DOUBLE-STRANDED RNA-BINDING PROTEIN 2 1 375 - -
Pvu5g1392 410 MobiDBLite consensus disorder prediction 354 410 - -
Pvu5g1392 410 Gene3D - 2 83 - -
Pvu5g1392 410 MobiDBLite consensus disorder prediction 246 267 - -
Pvu5g1392 410 MobiDBLite consensus disorder prediction 252 267 - -
Pvu5g1392 410 Gene3D - 84 155 - -
Pvu5g1392 410 PANTHER - 1 375 - -
Pvu5g1392 410 SUPERFAMILY dsRNA-binding domain-like 2 68 - -
Pvu5g1392 410 SMART DRBM_3 2 69 IPR014720 -
Pvu5g1392 410 SMART DRBM_3 88 154 IPR014720 -
Pvu5g1392 410 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1 70 IPR014720 -
Pvu5g1392 410 CDD DSRM_AtDRB-like_rpt2 86 154 IPR044451 GO:0003725
Pvu5g1392 410 CDD DSRM_AtDRB-like_rpt1 1 69 IPR044450 GO:0003725
Pvu5g1392 410 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 87 155 IPR014720 -
Pvu5g1392 410 SUPERFAMILY dsRNA-binding domain-like 88 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1392 Pvu-Chr5 36209258 36211983 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1392 - - gmx:100815739 665.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1392 5 36209258 36211983 Pvu5g1392 5 36209258 36211983 ECH
Pvu5g1392 5 36209258 36211983 Pvu11g0820 11 7393808 7397602 PCT