Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0820 ATGTACAAGAACCAGCTTCAGGAGCTGGCACAGCGAAGCTGCTTCAACCTGCCTTCTTACACGTGCATTCGGGAAGGTCCCGATCACGCGCCGCGCTTTAAGGCTACCGTCAACTTTAACGGCGAGATCTTCGAGAGCCCTCAGTACTGCTCCACGCTTCGTCAGGCGGAGCACTCCGCCGCCGAGGTCGCTCTCAATTCGCTCTCCAACCGTGCTCCCTCTCACTCCCTTGCCGCCAGGATCCTCGATGAAACGGGAGTGTACAAGAACCTCCTGCAGGAAATTGCACAGAGGGTTGGGGCGCCATTGCCGCAGTACTTTACGTTCAGGTCAGGCCTAGGACATCTTCCTGTATTTACTGGGACAGTGGAGTTAGCTGGAATTATGTTCACTGGTGAACCTGCTAAGAACAAGAAACAGGCGGAGAAAAATGCAGCTATGGCGGCTTGGTCTTCTCTAAAGCAATTGGCAAAAGAAACTGCAAGGTCTTCAACTGAACCTGAGAACAACGACGAACTAGAACAGATCACTATAGCACGGGCTTTGCGGACCTACCGACTGAAGGAAAAGATTTCAATGTCAAATCCAAATGCGCCAATTCCATTTCCAAAGAAGTTTCAGATTCAAAATCCCAGGCCAACCAGTCCTCAGCCTCCTCCTGCTGCTACATCAAAGATTCTTCCCTTAATATGCCAAAAGGCAGCTTCTCGAAGCAGGCATCCTGTCGCAGCATCTCCAGCAGCAGCAGTCAGTGACAATTCTGCGATGCCACAACTTTTTGCCACATCAGATAGCCGAAGAATTCGTCGCCCTAAGTTCCCTGCTGCTGGAGCAGCACCTTACGTTCCCATTAGACAAATGAGATCACCTTGCCATGGAATGGCACCTCCAGTGACGATAAGGACTGCTATACCTGTATTCTCTCCACCACCGCCAACAGCCGCCACGCTGTCCCTTCCAGTACTACGAGCTCCTCCTGTACGAGTTGCTCCTCCTGTCACTATTAGGCAAGCTGTTCCAGTATTTGCTGCTCCACCTGTTCAAATAGACGAACCTGTTCCCAGCCTTACTAGCCTAGAACCTGTTACTACCCCAAAAGATGATGCTCCAACTATTAGTTCCCCCAGCCAGGAAGAGAAACTACCAGTTAAAATTCCAGAGATAGAGATCAAGACCGAGAAAATTCCAGCTGAATCTGAGACAGTGCAGAGGTTGATGCAGCTGAAAATTTGA 1233 0.5036 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSAAEVALNSLSNRAPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYFTFRSGLGHLPVFTGTVELAGIMFTGEPAKNKKQAEKNAAMAAWSSLKQLAKETARSSTEPENNDELEQITIARALRTYRLKEKISMSNPNAPIPFPKKFQIQNPRPTSPQPPPAATSKILPLICQKAASRSRHPVAASPAAAVSDNSAMPQLFATSDSRRIRRPKFPAAGAAPYVPIRQMRSPCHGMAPPVTIRTAIPVFSPPPPTAATLSLPVLRAPPVRVAPPVTIRQAVPVFAAPPVQIDEPVPSLTSLEPVTTPKDDAPTISSPSQEEKLPVKIPEIEIKTEKIPAESETVQRLMQLKI* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0820 410 MobiDBLite consensus disorder prediction 353 381 - -
Pvu11g0820 410 MobiDBLite consensus disorder prediction 195 222 - -
Pvu11g0820 410 MobiDBLite consensus disorder prediction 357 378 - -
Pvu11g0820 410 Gene3D - 2 83 - -
Pvu11g0820 410 SUPERFAMILY dsRNA-binding domain-like 2 68 - -
Pvu11g0820 410 SUPERFAMILY dsRNA-binding domain-like 88 159 - -
Pvu11g0820 410 Pfam Double-stranded RNA binding motif 88 153 IPR014720 -
Pvu11g0820 410 Pfam Double-stranded RNA binding motif 2 68 IPR014720 -
Pvu11g0820 410 SMART DRBM_3 88 154 IPR014720 -
Pvu11g0820 410 SMART DRBM_3 2 69 IPR014720 -
Pvu11g0820 410 PANTHER - 1 410 - -
Pvu11g0820 410 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1 70 IPR014720 -
Pvu11g0820 410 CDD DSRM_AtDRB-like_rpt2 86 154 IPR044451 GO:0003725
Pvu11g0820 410 PANTHER DOUBLE-STRANDED RNA-BINDING PROTEIN 2 1 410 - -
Pvu11g0820 410 CDD DSRM_AtDRB-like_rpt1 1 69 IPR044450 GO:0003725
Pvu11g0820 410 Gene3D - 84 155 - -
Pvu11g0820 410 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 87 155 IPR014720 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0820 Pvu-Chr11 7393808 7397602 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0820 - - gmx:100816445 643.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1392 5 36209258 36211983 Pvu11g0820 11 7393808 7397602 PCT