Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1352 ATGTCCTTGCTACCTTCCTCTTTCTTCCACCTGGTTTCTCTCTTCTCTTTTCTTTTATTCTCAATTGTGATTTGTTATAGTACTGCTCAGGGTCCACCTTCCCCTGGCTACTACCCTAGTTCCAAAATTAGTCCTGTTACCTTTGGTGAGGGATTTAAAAACCTTTGGGGACCTCAGCATCAGAAACTAGACCAAGAGTCATTAACAATCTGGCTTGACACTTACACAGGGAGTGGATTCAAGTCACTTCACTCATACCGATCTGGATACTTTGGTGCTGCAGTTAAACTTCAACCTGGTTATACAGCAGGGGTCATAACATCTTTATACCTTTCAAACAACCAAGACTACCCGGGAAACCATGATGAAATAGACATTGAATTCCTTGGTACCACCCAAGATAAGCCATATGTCTTGCAGACAAATGTATACATCAGAGGAAGTGGAGATGGGAATATTATAGGGAGAGAGATGAGGTTTCACCTTTGGTTCGACCCAACAGAAGATTTTCACAACTATGCTATTCTATGGGAACCCAGTGAGATCATATTTTTGGTTGATGATGTCCCAATAAGAAGGTATCCTAGGAAGAGTGATGCCACGTTCCCCACAAGAGAAATGCATGTGTACGGATCAATATGGGATGCATCTTCATGGGCCACAGAGGGTGGAAAATACAAAGCTGATTATAAATACCAACCCTTCATTGGTCAATACCAAAATTTCAAACTTGAAGGTTGCACCACAGAAGCCTCCACTTCATGCCAACCACCATCAGCCTCACCATCAGGCCATGGAAGCCTGAGTCCTCAGCAACTTGCTGCAATGCAATGGGTCCAAAACAACCACTTGGTGTATGACTATTGCCATGATCCTGGGAGAGACCACACCCTTACTCCAGAATGTTAA 909 0.4334 MSLLPSSFFHLVSLFSFLLFSIVICYSTAQGPPSPGYYPSSKISPVTFGEGFKNLWGPQHQKLDQESLTIWLDTYTGSGFKSLHSYRSGYFGAAVKLQPGYTAGVITSLYLSNNQDYPGNHDEIDIEFLGTTQDKPYVLQTNVYIRGSGDGNIIGREMRFHLWFDPTEDFHNYAILWEPSEIIFLVDDVPIRRYPRKSDATFPTREMHVYGSIWDASSWATEGGKYKADYKYQPFIGQYQNFKLEGCTTEASTSCQPPSASPSGHGSLSPQQLAAMQWVQNNHLVYDYCHDPGRDHTLTPEC* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1352 302 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 31 13 302 - -
Pvu5g1352 302 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 265 302 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Pvu5g1352 302 PIRSF EndGlu_transf 9 302 IPR016455 GO:0010411|GO:0016762|GO:0042546
Pvu5g1352 302 Pfam Glycosyl hydrolases family 16 50 231 IPR000757 GO:0004553|GO:0005975
Pvu5g1352 302 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 27 239 IPR000757 GO:0004553|GO:0005975
Pvu5g1352 302 SUPERFAMILY Concanavalin A-like lectins/glucanases 47 302 IPR013320 -
Pvu5g1352 302 Gene3D - 28 302 - -
Pvu5g1352 302 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 13 302 IPR044791 GO:0004553
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1352 Pvu-Chr5 35625610 35627974 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1352 12 302 Glycoside Hydrolase AT3G44990 64.846 7.43e-140 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1352 K08235 - gmx:100796768 559.296
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1352 5 35625610 35627974 Pvu5g1352 5 35625610 35627974 ECH
Pvu5g1352 5 35625610 35627974 Pvu11g0875 11 8212924 8214984 PCT