Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0875 ATGCCATCATCACTATCCCCTTTCCTCCATATGATTCATGTTCTCTCCCTTCTTGTACTCTCATGTATGATTTATTCTGGTTGTGCTCAGGGACCACCTTCACCTGGCTACTACCCCAGTTCCAAAATTAGTCCTGTTAGCTTTAATCAAGGGTTTAAAAACCTTTGGGGACCTCAGCATCAGAGAATAGACCAAGGCTCATTGACAATATGGCTAGACACTAGCTCAGGGAGTGGATTCAAGTCACTTCACTCTTATAAGTCTGGATACTTTGGTGCTGCAATTAAGCTTCAACCTGGTTACACTGCAGGAGTCATTACATCTCTCTACCTTTCAAACAACCAAGACCACCCCGGAAACCACGATGAAATTGACATAGAGTTCCTTGGTACGACGCCAGATAAGCCATATGTCTTGCAGACAAATGTATACATCAGAGGAAGTGGAGATGTGAATATTGTAGGAAGAGAGATGAGGTTTCATCTCTGGTTTGACCCAACACAGGATTTTCACAACTATGGCATTCTATGGAAACCCACTGAGTTAATATTTTTTGTGGATGATGTCCCAGTAAGAAGGTATCCAAGGAAAAGTGAGGCCACATACCCTACAAGGCCAATGTATGTGTATGGGTCAATTTGGGATGCATCTGCTTGGGCAACAGAGGGTGGAAAATACAAAGCTGACTATAAGTACCAACCCTTCATTGGTAGGTACAAAAACTTCAAACTTCAAGGTTGCACTAGTGAAAGCTCTGCCTCATGCAGGCCACCTTCTGGCTCTCCATCTGGCTTTGGAAGTTTGAGCCCTCAGCAGTTCAGGGCCATGCAATGGGTCCAAAACAACTACATGGTGTACAACTATTGCCATGATCCTAGGAGAGACCACAATCTGATCCCAGAATGCTAA 909 0.44 MPSSLSPFLHMIHVLSLLVLSCMIYSGCAQGPPSPGYYPSSKISPVSFNQGFKNLWGPQHQRIDQGSLTIWLDTSSGSGFKSLHSYKSGYFGAAIKLQPGYTAGVITSLYLSNNQDHPGNHDEIDIEFLGTTPDKPYVLQTNVYIRGSGDVNIVGREMRFHLWFDPTQDFHNYGILWKPTELIFFVDDVPVRRYPRKSEATYPTRPMYVYGSIWDASAWATEGGKYKADYKYQPFIGRYKNFKLQGCTSESSASCRPPSGSPSGFGSLSPQQFRAMQWVQNNYMVYNYCHDPRRDHNLIPEC* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0875 302 Gene3D - 28 302 - -
Pvu11g0875 302 Pfam Glycosyl hydrolases family 16 49 231 IPR000757 GO:0004553|GO:0005975
Pvu11g0875 302 SUPERFAMILY Concanavalin A-like lectins/glucanases 47 302 IPR013320 -
Pvu11g0875 302 PIRSF EndGlu_transf 8 302 IPR016455 GO:0010411|GO:0016762|GO:0042546
Pvu11g0875 302 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 31 12 302 - -
Pvu11g0875 302 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 267 302 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Pvu11g0875 302 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 39 239 IPR000757 GO:0004553|GO:0005975
Pvu11g0875 302 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 12 302 IPR044791 GO:0004553
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0875 Pvu-Chr11 8212924 8214984 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0875 14 302 Glycoside Hydrolase AT3G44990 66.096 9.12e-144 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0875 K08235 - gmx:100781528 562.762
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1352 5 35625610 35627974 Pvu11g0875 11 8212924 8214984 PCT