Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1297 ATGGAATTGGGAAGCATAATTCACTTCCTTCAGGATAAGACCATTTTAGTCACTGGTGCCACCGGTTTTCTTGCAAAAATTTTTGTGGAAAAAATATTGAGGGTTCAACCAAATGTGAAGAAACTTTATCTGCTTTTGAGAGTTAAAGATACTGCATCCGCTACTCAACGCTTAGAAAACGAGATCTTAGGGAAGGACTTGTTTAGATTGCTGAAGGAAAAACTGGGTACAAGATTCAATTCCTTTGTCTCAGAAAAGCTCACTGTGGTACCTGGAGACATTTCTCATGAGGACTTGAATTTGAAGAACTCCATTCTGTGGGAAGAAATTTGCAACCAAACAGACGTTATAGTTAATGTAGCTGCATCAACTAAGTTCGATGAAAGATACGATGTTGCATTGGGTATAAATACATTAGGAGTTAAGCATGTGATGAGCTTTGCCAAAAAATGTGTAAAGCTGAAGGTGCTTGTCCACGTATCAACAGCTTATGTATGTGGAGAAAAAGGAGGACTCGTACTAGAGGATCCACATCAGTTTGGTGTGTCACTGAATGGAGCAACTGGACTAGACATTGATATGGAAAAGAAGATGGTAGATGAGAAATTGAATGAGCTGAGAGAGGAGGGAGCCACAGAACATGATATTGAATTGGCCATGAAGGACTTGGGAACTAAAAGAGCAAGGATGTATGGATGGCCAAACACGTACGTCTTTACAAAGGCAATGGGAGAAATGATTGTAGGAACTACAAAGGGAAACATGAATGTAGTAATTGTACGTCCCACAATCGTTACTAGTACTTACAGAGAACCTTTCCCTGGTTGGATAGAAGGTTTAAGAACCATAGACAGCTTGGTTGTTGCTTATGGTAGAGGAAAGATAACTTGCTTCCTTGGTGATATTAAGGCTGTTTTTGACTTGATACCAGCAGACATGGTGGTGAATGCAATCATAGTGAGCATGGTGGCTCATGCAAATCAACCTAGTGATATCATATATCATGTGGGTTCTTCTGTTGCAAATCCAGTTAGGTACCTTAATATTCGAGAGTACGGGGAAAGATATTTCATGAAAAAACCTTGGATAAACAAGGATGGAACAGCCGTGAAGGTTGGAAAAATTACCATAATGAGCAGCATTGCTGGCTTCCATAAATATATGTACATTCGTTATCAGCTTCCCTTGAAGGGACTAGAGCTGGTGAATGCAGCTTCGTGCCATTATTTTCAGGAAACGTGTCTGGACTTGAATAGGAAGATCCACAGTATCATGCGATTGGTTGACCTTTACAAGTCTTACTTGTTCTTCAATGGGGTATTTGATGATATGAATACAGAAAAGTTATTATCAAAGGCAAGAGAAGGAGGTGGAGTGGAGACGGAATTGTTTTACTTTGACCCTAAAGTGATTGATTGGGAAGACTATTTCATGAATATCCATTTTCCTGGAATCATAAAGTATGCTTTCAAGTGA 1476 0.395 MELGSIIHFLQDKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRVKDTASATQRLENEILGKDLFRLLKEKLGTRFNSFVSEKLTVVPGDISHEDLNLKNSILWEEICNQTDVIVNVAASTKFDERYDVALGINTLGVKHVMSFAKKCVKLKVLVHVSTAYVCGEKGGLVLEDPHQFGVSLNGATGLDIDMEKKMVDEKLNELREEGATEHDIELAMKDLGTKRARMYGWPNTYVFTKAMGEMIVGTTKGNMNVVIVRPTIVTSTYREPFPGWIEGLRTIDSLVVAYGRGKITCFLGDIKAVFDLIPADMVVNAIIVSMVAHANQPSDIIYHVGSSVANPVRYLNIREYGERYFMKKPWINKDGTAVKVGKITIMSSIAGFHKYMYIRYQLPLKGLELVNAASCHYFQETCLDLNRKIHSIMRLVDLYKSYLFFNGVFDDMNTEKLLSKAREGGGVETELFYFDPKVIDWEDYFMNIHFPGIIKYAFK* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1297 491 CDD FAR-N_SDR_e 13 361 - -
Pvu5g1297 491 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 6 337 IPR036291 -
Pvu5g1297 491 CDD FAR_C 415 490 IPR033640 -
Pvu5g1297 491 PANTHER FATTY ACYL-COA REDUCTASE 2 489 - -
Pvu5g1297 491 Pfam Male sterility protein 17 318 IPR013120 -
Pvu5g1297 491 Pfam Male sterility protein 392 491 IPR033640 -
Pvu5g1297 491 Gene3D - 8 374 - -
Pvu5g1297 491 PANTHER MALE STERILITY PROTEIN 2-RELATED 2 489 IPR026055 GO:0080019
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1297 Pvu-Chr5 34970296 34973651 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1297 110 490 Acyl Lipid Metabolism Gene Families AT4G33790 61.680 3.68e-178 503
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1297 K13356 - gmx:100789566 820.461
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1297 5 34970296 34973651 Pvu5g1297 5 34970296 34973651 ECH
Pvu5g1297 5 34970296 34973651 Pvu11g0949 11 9313993 9320104 PCT