Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1296 ATGAAATGCCTTGATTTAGATTCAACTCACACCACTTTGCATCTTCTTGAGAACCAACCCACTTCCCCTTTGTTTTTCTTTCTCAATACATTTTCTCCAATGGAGGAGGTAGGAAGTGTTCTTCACTTTCTTCAAAACAAGACCATTTTAATTGCTGGAGGCACTGGTTTTCTTGCCAAGATTTTACTGGAGAAGATATTGAGGGTTCAACCCAATGTTAAGAAGATTTTCCTTCTTTTAAGAGCCTCCGATGCCAACTCTGCTACTTATCGCTTGCACAATGAGATCATAGGGAAGGACTTATTCATTGTGCTAAAGGAAAAATTGGGTTCAAATTTTAAGTCATTCATTGCTGAAAAAGTGACTCTGGTGCCGGGGGACATCACCTATGAGGGTTTGGGTTTGAAGGATTCAACTCTGAGGGAAGAGATTTGCAATCAGACTGATGTTATCGTCAATCTGGCTGCAACTACCAACTTTGATGAAAGGTACGATATAGCGTTGGATCTAAACACCTTTGGGGTCAAGTATGTCATGAACTTTGCTAAGCAATGTACTAAACTGAAAGTGCTTCTTCATGTATCAACAGCTTATGTATGTGGTGAGAGAGGTGGACTCATCCTAGAAGACCCCTATCACTTTGGTGAAACGCTGAATGGAGTGTCTGGCCTAGACATCGATGCAGAAAAGACAATAGTGTGTAACAAATTGGATGAACTACGAGAACAAGGAGCCACAGAACGTGATGTTAAAATAGCCATGAAGAATCTGGGTATTAGCAGGGCAAAGGTGTATGGATGGCCAAACACATACGTGTTTACAAAGGCAGTGGGAGAAATGCTTGTCGAAAAACTCAAAGGAAACCTATCTGTTGTTATTATTCGTCCTACCATTGTCACAAGCACAATGAAAGAACCTTTCCCTGGTTGGGTTGAGGGTATCAGAACCATTGACAGTTTAGCTGTGACTTATGGGAAAGGAAAGTTAACATGCTTCCTTGGAGATATCAATGGAGTTGTGGATGTGGTCCCAGCAGACATGGTGGTGAATGCTATGCTAGTGGCCATGGTGGCTCATGCAAAGCAGCCAAGTGATATCATATACCATGTGGGTTCCTCTCTTAGAAATCCACTCACGTACTTGAATCTCCAAGACTTTGGATTGAAATATTTCACAGCAAAACCATGGATAAAAAAGGATGGTACACCGGTCAAAGTTGGCAGAGTAACTGTATTGACCAGCATGGATAGCTTTCAGAGATACATGTTCATTCGCTACCTCCTTCCATTGAAGGGACTTGAGCTTGCCAATACTGCACTTTGCCAGTATTTTCAGGGAACGTATCTCGAGCTGAACAGGAAGATCCAAGTTGTGATGCGGATGGTTGAACTTTACAGACCCTACATGTTCTTTAGTGGCCTATTTGATGATATGAACACAGAGAAGTTGAGAATGGCAGCAGAACAAAGTGGGACAGAGATAGATATGTTTTACTTTGATACAAAAGAAATTAATTGGGAGGATTACTTTATGAAGACCCATCTTCCTGGTGTTGTCAAGTACATTTTTAAGTGA 1575 0.4133 MKCLDLDSTHTTLHLLENQPTSPLFFFLNTFSPMEEVGSVLHFLQNKTILIAGGTGFLAKILLEKILRVQPNVKKIFLLLRASDANSATYRLHNEIIGKDLFIVLKEKLGSNFKSFIAEKVTLVPGDITYEGLGLKDSTLREEICNQTDVIVNLAATTNFDERYDIALDLNTFGVKYVMNFAKQCTKLKVLLHVSTAYVCGERGGLILEDPYHFGETLNGVSGLDIDAEKTIVCNKLDELREQGATERDVKIAMKNLGISRAKVYGWPNTYVFTKAVGEMLVEKLKGNLSVVIIRPTIVTSTMKEPFPGWVEGIRTIDSLAVTYGKGKLTCFLGDINGVVDVVPADMVVNAMLVAMVAHAKQPSDIIYHVGSSLRNPLTYLNLQDFGLKYFTAKPWIKKDGTPVKVGRVTVLTSMDSFQRYMFIRYLLPLKGLELANTALCQYFQGTYLELNRKIQVVMRMVELYRPYMFFSGLFDDMNTEKLRMAAEQSGTEIDMFYFDTKEINWEDYFMKTHLPGVVKYIFK* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1296 524 CDD FAR-N_SDR_e 47 395 - -
Pvu5g1296 524 Pfam Male sterility protein 425 524 IPR033640 -
Pvu5g1296 524 PANTHER FATTY ACYL-COA REDUCTASE 36 523 - -
Pvu5g1296 524 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 41 371 IPR036291 -
Pvu5g1296 524 CDD FAR_C 424 523 IPR033640 -
Pvu5g1296 524 Pfam Male sterility protein 51 352 IPR013120 -
Pvu5g1296 524 Gene3D - 41 405 - -
Pvu5g1296 524 PANTHER MALE STERILITY PROTEIN 2-RELATED 36 523 IPR026055 GO:0080019
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1296 Pvu-Chr5 34953368 34959106 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1296 144 523 Acyl Lipid Metabolism Gene Families AT4G33790 59.737 1.50e-174 495
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1296 K13356 - gmx:100788680 882.093
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1296 5 34953368 34959106 Pvu5g1296 5 34953368 34959106 ECH
Pvu5g1296 5 34953368 34959106 Pvu11g0950 11 9353023 9358685 PCT