Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1275 ATGACCGAGGTCCTCCACTCCCCACCCCATTTTGCTTCTTCTTCTTCATCACCACCAACAACAAAGACAAGGACAACCACAACAAACTCATCAACTCCTTCTTCCTCTTCATTCTCTCGCAATGCCTTTCTCCGACCACACATCTCTCTCTTGGCTCTTCTCTTGAACCTTCTCAGGAAATCCTTCCTTCCCCGCAAAACCATCTCCTCCATCATGGACATAGGCTCACCAACTAACGTACGCCATGTTGCTCATGTCACCTTTGATAGGTTCAACGGTTTCTTGGGTTTGCCTGTTGAGTTTGAACCTGAAGTCCCCAGAAGGCCTCCTAGTGCTAGTGCTTCTGTTTTTGGAGTTTCAACAGAATCCATGCAGTTGTCGTATGACTCCAGAGGGAACAGTGTGCCAACTATTCTGCTATTGATGCAAAGGCATCTATATTCTCAAGGAGGGTTGCAGGTAGAGGGGATTTTCAGAATTAACGCGGACAATGGTCAAGCGGAGCATGTCAGGGATCAATTGAATCAGGGAGTGGTTCCAGAAGGCATTGATGTACATTGTTTGGCAGGGCTAATTAAGGCTTGGTTTAGGGAACTTCCTACAGGCATTCTGGATTCATTATCACCGGAGCAGGTCATGCAATGCCAGACTGAGGAGGAGTGTGCTGAAATAGTGAGACATCTACCTCACACTGAAGCTTCACTCTTGGACTGGGCCATCAATCTGATGACTGATGTTGTCCAACATGAACATGTTAATAAGATGAATGCACGTAACATTGCCATGGTTTTTGCACCTAACATGACGCAGATGGCCGATCCTATATCTGCACTGATGTATGCAGTTCAAGTAATGAACTTCTTGAAGACGCTCATATTAAGGACACTGCGGGAAAGAAAGGATTCTGTGGTAGAATCTAATCCTAGATTTCACCTAGATCCTTCGGGTGGTAATGGAAGCCAAAAACTTTTGGAGTCCTTCCAGCAAGATACTCCTGCAGAAAATGAAGTGGCTCAGGGAAACATTGTTTTAGAGAAAATTGGCTTAGAGTGTTTATCAGTCCAAAACAACTCAACAGAAGGAGAACTTGGCAGTCTGGCAAACTCTTCTGAGAATATTCTTAGCAATGAGGAACTGTATTGTGAGTTTCCACCCGTAGGAAACATGGGAAAGGGTAAAACTGGCCAATCAAGTAAATCAAATGGTAAAAAAGAGTCCAAAAAGACTAGAGGCAGCAACCTGTGA 1245 0.4466 MTEVLHSPPHFASSSSSPPTTKTRTTTTNSSTPSSSSFSRNAFLRPHISLLALLLNLLRKSFLPRKTISSIMDIGSPTNVRHVAHVTFDRFNGFLGLPVEFEPEVPRRPPSASASVFGVSTESMQLSYDSRGNSVPTILLLMQRHLYSQGGLQVEGIFRINADNGQAEHVRDQLNQGVVPEGIDVHCLAGLIKAWFRELPTGILDSLSPEQVMQCQTEEECAEIVRHLPHTEASLLDWAINLMTDVVQHEHVNKMNARNIAMVFAPNMTQMADPISALMYAVQVMNFLKTLILRTLRERKDSVVESNPRFHLDPSGGNGSQKLLESFQQDTPAENEVAQGNIVLEKIGLECLSVQNNSTEGELGSLANSSENILSNEELYCEFPPVGNMGKGKTGQSSKSNGKKESKKTRGSNL* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1275 414 CDD CRIB 72 112 - -
Pvu5g1275 414 MobiDBLite consensus disorder prediction 398 414 - -
Pvu5g1275 414 ProSiteProfiles Rho GTPase-activating proteins domain profile. 119 304 IPR000198 GO:0007165
Pvu5g1275 414 MobiDBLite consensus disorder prediction 7 38 - -
Pvu5g1275 414 MobiDBLite consensus disorder prediction 1 38 - -
Pvu5g1275 414 SUPERFAMILY GTPase activation domain, GAP 114 293 IPR008936 GO:0007165
Pvu5g1275 414 Gene3D CRIB domain 70 104 IPR036936 -
Pvu5g1275 414 Gene3D Rho GTPase activation protein 107 303 IPR008936 GO:0007165
Pvu5g1275 414 CDD RhoGAP 136 292 - -
Pvu5g1275 414 MobiDBLite consensus disorder prediction 384 414 - -
Pvu5g1275 414 Pfam RhoGAP domain 136 270 IPR000198 GO:0007165
Pvu5g1275 414 PANTHER MKIAA1688 PROTEIN 1 385 IPR044785 GO:0005096
Pvu5g1275 414 SMART RhoGAP_3 133 296 IPR000198 GO:0007165
Pvu5g1275 414 PANTHER PAK-BOX/P21-RHO-BINDING DOMAIN RHO GTPASE ACTIVATING PROTEIN 1 385 - -
Pvu5g1275 414 SMART PBD_5 74 108 IPR000095 -
Pvu5g1275 414 Pfam P21-Rho-binding domain 73 100 IPR000095 -
Pvu5g1275 414 ProSiteProfiles CRIB domain profile. 74 87 IPR000095 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1275 Pvu-Chr5 34712217 34716147 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1275 - K20642 gmx:100776004 617.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1275 5 34712217 34716147 Pvu11g0976 11 9710626 9714481 PCT