Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1252 ATGATTTCTCCGCAACCCAAAAAACCCTTATTCTGGTTCTTCCTCCTTTTCCTCGTGTTGTTGCAGAAGCGATTCCAGATGGGCGTGGTCGACCAAGACTCTTCTGATTCCCAATCCAATCGGATCCTGATCCGTGAGGTCTGGGCCTCCAACCTTCAATCAGAATTCCAGATTATTCGCGACGTAATCGACCATTACCCTTTTGTTTCCATGGATACGGAGTTCCCCGGCGTTATCTACCTACCCCAAGTGGTGGCTCCGACAGAACCCACCCGCTGCGCCCTTAAACCCTCCGAGCACTATCGCTTCCTCAAATCCAACGTCGATGTCCTCAACCTTATCCAGGTGGGTCTCACGCTTTCCGACGCAGACGGAAACCTCCCTCACATCGGGACCAGCAACAGCTTCATCTGGGAATTCAACTTCCGCGATTTCAACGTGGAGCGTGATTCCCACGCTCCTGACTCCATCGATCTACTCCGCCGTCAAGGGATTGACTTCCGGCGGCACGCAGCGGAGGGCATCGACTCCTGCCTTTTTGCGGAGCTGATGATGTCATCGGGATTGGTGTGTAACGAGGCGGTGAGTTGGGTGACGTTTCACAGCGCATATGATTTCGGGTATTTGGTTAAGATTCTGACCCGACGGAGCCTGCCCCATGGGTTAAAGGATTTCTTGAAGATTTTGAAGGTGTTTTTTGGAGAAAATGTATATGACATGAAACACATGATGCGGTTCTGTGACACCCTTTATGGCGGTTTGGACCGGCTTGCACTAACCCTCAACGTGGACCGGGCTGTTGGGAAGTGCCACCAGGCCGGGTCTGATAGCCTGCTGACGTGGCATGTGTTTAAGAGAATGAAGGATATTTATTTCGCGGAGGATGGGCCCCAGAGATATGCGGGTGTTTTATTTGGATTGGAGCTTGCATTTTCTTCAAGTTGA 945 0.5143 MISPQPKKPLFWFFLLFLVLLQKRFQMGVVDQDSSDSQSNRILIREVWASNLQSEFQIIRDVIDHYPFVSMDTEFPGVIYLPQVVAPTEPTRCALKPSEHYRFLKSNVDVLNLIQVGLTLSDADGNLPHIGTSNSFIWEFNFRDFNVERDSHAPDSIDLLRRQGIDFRRHAAEGIDSCLFAELMMSSGLVCNEAVSWVTFHSAYDFGYLVKILTRRSLPHGLKDFLKILKVFFGENVYDMKHMMRFCDTLYGGLDRLALTLNVDRAVGKCHQAGSDSLLTWHVFKRMKDIYFAEDGPQRYAGVLFGLELAFSSS* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1252 314 Pfam CAF1 family ribonuclease 47 175 IPR006941 -
Pvu5g1252 314 Gene3D - 31 310 IPR036397 GO:0003676
Pvu5g1252 314 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 38 309 IPR039637 GO:0004535|GO:0030014
Pvu5g1252 314 PANTHER CCR4-ASSOCIATED FACTOR 1 HOMOLOG 11-RELATED 38 309 - -
Pvu5g1252 314 SUPERFAMILY Ribonuclease H-like 44 306 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1252 Pvu-Chr5 34410845 34412261 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1252 K12581 - gmx:100817875 488.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1252 5 34410845 34412261 Pvu5g1252 5 34410845 34412261 ECH
Pvu5g1252 5 34410845 34412261 Pvu11g1004 11 10118002 10120870 PCT