Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1004 ATGGGCGTGTTCAGCGAAGACCAGAATCCAATTGTGATCCGTGAAGTATGGGCTTCCAATATAGATTCCGAATTCGAATTCATCCGCGAACTCATCGATGACTACCCTTTCATCTCGATGGATACTGAGTTTCCTGGTGTGATTTTCCGGCCTCATGTGGACTCCAACAAACCCTACAACCACCGCACGCGCCGCCCTGCTGACCACTACCGCCTCCTCAAGTCCAACGTTGACGCGCTCAACCTCATCCAGGTCGGCCTCACTCTCACTGACTCTGCCGGAAACCTCCCCAGCGACGCCGGAAATCGCTTCATCTGGGAGTTCAACTTCTGCGACTTCGACGTGGCGCGTGACGCCTACGCGCCGGATTCCATCGCGCTCCTCCGCCGCCAGGGGATCGACTTCGAGCGCAACGCCGCTGACGGTGTGGACTCCACGCGCTTCGCGGAGCTGTTGATGTCTTCAGGACTCGTGTGCAACGACGCGGTAAGCTGGGTCACGTTCCACAGCGCTTACGATTTCGGGTATTTGGTTAAGATCCTTACCCGACAGGATTTACCGACCCGGTTGGAGGATTTTTTAAATATTGTGAAAGTGTTATTCGGAGATAACGTGTATGATGTGAAGCACGTGATGAGGTTCTGTGATACACTCTACGGTGGTTTGGACCGGGTTGCTCGGACGCTTAACGTGGACCGTGCTGTAGGGAAGTGCCACCAGGCTGGGTCAGACAGCTTGCTGACCTGGCACGCCTTCCAGAAGATTGTGGATATTTATTTTGTTAAGGGTGAACACCAAAAGCATGCTGCCTACTATTGGCTATTGCCAGAGACATAA 837 0.5364 MGVFSEDQNPIVIREVWASNIDSEFEFIRELIDDYPFISMDTEFPGVIFRPHVDSNKPYNHRTRRPADHYRLLKSNVDALNLIQVGLTLTDSAGNLPSDAGNRFIWEFNFCDFDVARDAYAPDSIALLRRQGIDFERNAADGVDSTRFAELLMSSGLVCNDAVSWVTFHSAYDFGYLVKILTRQDLPTRLEDFLNIVKVLFGDNVYDVKHVMRFCDTLYGGLDRVARTLNVDRAVGKCHQAGSDSLLTWHAFQKIVDIYFVKGEHQKHAAYYWLLPET* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1004 278 PANTHER CCR4-ASSOCIATED FACTOR 1 HOMOLOG 11-RELATED 7 271 - -
Pvu11g1004 278 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 7 271 IPR039637 GO:0004535|GO:0030014
Pvu11g1004 278 Pfam CAF1 family ribonuclease 16 144 IPR006941 -
Pvu11g1004 278 Gene3D - 2 275 IPR036397 GO:0003676
Pvu11g1004 278 SUPERFAMILY Ribonuclease H-like 12 264 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1004 Pvu-Chr11 10118002 10120870 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1004 K12581 - gmx:100811298 482.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1252 5 34410845 34412261 Pvu11g1004 11 10118002 10120870 PCT