Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1216 ATGGGTAGCGGCATCTACGGCGCTTCCGACCTCCGCATTTTGTGCACCGTCGTCTTAATGGTGTATGGTTTGCCTCAGGCATTAACGTTGCGAGAGTCTTCTCCGTCGTCACCGACGGCTCAGATTAATTCGAACTCAATCTTAGTTGCTCTTCTGGACTCGCAGTACACGGAACTGGCGGAGCTTGTGGAAAAAGCAATGCTGTTGGAGAAACTAGAAGAGACGGTGGCTACACACAACATAACAATTTTCGCTCCGACCAACCAAGCTTTGGACCGGAACCTCGACGCTGATTTCAAGCGCTTCCTTCTCCAACCCGCGAACCTTCACTCCCTCCAAACGCTTCTCCTCTCTCACATCATCCCCACGCAAATCGGATCCCAAACCCTAATCCGCCACGTCACCACTCTCTCCAACCACCAAATCCGTCTCTCCGCAAACCTCACCGCCGTCGACCAGGCCCGCGTTACACACCCGGATGTCCTCACCCGACCCGACGGCGTCATACACGCCATCGACCGCCTCCTCCTCCCTCGCTCCGTCGAGCACGACTTCAACCGCCGCCGCACCCTTCGCTCCATCTCCGCCGTCAAACCCGAGGGAGCCCCGGAGGTCGACCCGAGAACCCATCGTCTCAAAAAACCTCCTCCGCCTGCGAAGCCTGGCTCCTCTCCGGCTCTTTCGATATACGATGCCTTGTCTCCGGGACCATCCCTTGCTCCGGCGCCGGCGCCGGGGCCTGGTGGACCGCACCACCATTTCAATGGCGAGAAACAGGTGAAGGATTTCATCCACACACTTCTCCACTACGGTGGATACAACGAGATGGCAGACATTCTCGTGAATCTAACGTCGTTAGCCGTTGAAATGGGTCATTTAGTGTCTGAGGGTTACATTCTCACCGTTTTGGCTCCGAACGACGAAGCCGTGGCGAAGTTAACGACGGAACAGTTGAGTGAACCGGGTGCGCCGGAGCGGATAATGTACTATCACATAATACCGGAGTACCAGACGGAAGAGAGCATGTACAATGCGGTTCGAAGGTTCGGGAAGGTTCGTTACGATACTCTACGGTTGCCGCATAAGGTGGTTGCACAGGAGGCTGATGGGTCCGTTAAATTCGGGCGCGGGGACGGGTCGGCGTATTTGTTCGACCCGGACATATACACGGATGGTCGGATCTCGGTTCAGGGGATTGATGGGGTTTTGTTTCCGATTGATGAGGAGGAGGAGGCGGAGCGGGTTAAACCCGCTACCCGGTCGGGTCAACCCGCTGCAAAAGTTGTCATGCACAGGAGAGGAAAATTACAGGAAACAGCATGCTGGATGCTCGGAGCCTTTGGACAACATTCTAGATTCACCACTTGCCAATGA 1374 0.556 MGSGIYGASDLRILCTVVLMVYGLPQALTLRESSPSSPTAQINSNSILVALLDSQYTELAELVEKAMLLEKLEETVATHNITIFAPTNQALDRNLDADFKRFLLQPANLHSLQTLLLSHIIPTQIGSQTLIRHVTTLSNHQIRLSANLTAVDQARVTHPDVLTRPDGVIHAIDRLLLPRSVEHDFNRRRTLRSISAVKPEGAPEVDPRTHRLKKPPPPAKPGSSPALSIYDALSPGPSLAPAPAPGPGGPHHHFNGEKQVKDFIHTLLHYGGYNEMADILVNLTSLAVEMGHLVSEGYILTVLAPNDEAVAKLTTEQLSEPGAPERIMYYHIIPEYQTEESMYNAVRRFGKVRYDTLRLPHKVVAQEADGSVKFGRGDGSAYLFDPDIYTDGRISVQGIDGVLFPIDEEEEAERVKPATRSGQPAAKVVMHRRGKLQETACWMLGAFGQHSRFTTCQ* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1216 457 SUPERFAMILY FAS1 domain 239 406 IPR036378 -
Pvu5g1216 457 SMART fasc_3 301 406 IPR000782 -
Pvu5g1216 457 SMART fasc_3 82 179 IPR000782 -
Pvu5g1216 457 Pfam Fasciclin domain 54 178 IPR000782 -
Pvu5g1216 457 Pfam Fasciclin domain 299 404 IPR000782 -
Pvu5g1216 457 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 3 457 - -
Pvu5g1216 457 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 3 457 IPR044654 -
Pvu5g1216 457 Gene3D FAS1 domain 283 405 IPR036378 -
Pvu5g1216 457 ProSiteProfiles FAS1/BIgH3 domain profile. 43 176 IPR000782 -
Pvu5g1216 457 Gene3D FAS1 domain 25 179 IPR036378 -
Pvu5g1216 457 SUPERFAMILY FAS1 domain 45 179 IPR036378 -
Pvu5g1216 457 MobiDBLite consensus disorder prediction 192 256 - -
Pvu5g1216 457 ProSiteProfiles FAS1/BIgH3 domain profile. 260 388 IPR000782 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1216 Pvu-Chr5 33831763 33835341 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1216 - - gmx:100815434 719.539
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1216 5 33831763 33835341 Pvu11g1036 11 10929013 10932595 PCT