Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1036 ATGGATTGCCGCATCTATGGCGTCACGATCCTTCTCTTCCTCCTCCCAACTCTCACATTCTCTCTCTCACAAGGTCAGATAAACTCAAACTCAATCCTCGTGGCTCTGTTGGACTCGCATTACACTGAGGTTGCTGAGCTAGTGGAAAAAGCCATGCTCCTTCAAACGCTCGAAAACACGGTAATGAACCACAACATCACAATCTTCGCACCCAGAAACGAAGCCCTCGAACGCGATCTCGACCCTGATTTCAAGCGCTTCCTTCTTGAACCCCGCAACCTGCAGTCTCTCCAAACCCTTCTCATGTCCCACATCGTCCCCAAAAGGATCACAAAACCCAAATACCAACCCGGGTTAAGTAACTCTGGTCGACCGACCCGACACAAAACCCTCGCCCAGAATCAACACCTCTCTCTCCAGACAGTTAATTCCACTCACTGGAATGTCGACTCTTCCCGTGTCACCCACCCGGATTCCTTGACCCGACCCGACGGCGTTATCCATGGCATCGATACGCTCCTCATCCCTCGCTCCGTACAAGACGACTTCAACCGCCGCCGCAACCTCATCTCCATCGCCGCCGTGAAACCCGAATCCGCTCCGGAGGTCGACCCGCGCACCCACCGCTTGAAGAAACCGGCTCCCCCGTCGCCGGCAGGCTCCGCGCCTGCGCTGCCGATCTACGACGCGATGGCGCCGGGACCATCCTTGGCGCCGGCGCCGGCTCCTGGACCGGGTGGACCACGCCACCATTTCAACGGCGAGAAACAGGTGAAAGACTTCATCGAAACTCTCCTCCACTACGGCGGTTACAATGAAATGGCAGATATTCTGGTAAACTTAACGTCACTGGCGACGGAGATGGGAAGGTTAGTTTCGGAGGGTTACGTTTTGACGGTGCTGGCTCCTAATGACGAAGCGATGGCGAAGTTAACGACGGACCAGTTGAGTGAACCGGGTTCGCCCGAACAGATTATGTACTATCACTTGATTCCCGAGTATCAGACCGAGGAGAGCATGTACAATGCTGTTAGAAGGTTCGGGAAGGTCCATTACGACACGTTACGGTTGCCGCATAAGATGACGGCGCAGGAGGCTGATGGCTCCGTTAAGTTCGGTCACGGCGACGAGTCCGCGTACTTGTTCGACCCGGATATTTACAAGGATGGACGGATCTCCGTTCAGGGAATCGACGGCGTTCTGTTTCCGCCTCAGGAGGATGAGGCTGGGCCTGTGACCCGGGCCCAACCCGCTAAGGTCGTTGTTAAGCAAAGAAGAGGAAAATTGTTGGAAACAGCATGTTGGATGCTTGGAAGCTTTGGTCAGAATTCTAGATTCATGTCTTGTCAATGA 1353 0.5447 MDCRIYGVTILLFLLPTLTFSLSQGQINSNSILVALLDSHYTEVAELVEKAMLLQTLENTVMNHNITIFAPRNEALERDLDPDFKRFLLEPRNLQSLQTLLMSHIVPKRITKPKYQPGLSNSGRPTRHKTLAQNQHLSLQTVNSTHWNVDSSRVTHPDSLTRPDGVIHGIDTLLIPRSVQDDFNRRRNLISIAAVKPESAPEVDPRTHRLKKPAPPSPAGSAPALPIYDAMAPGPSLAPAPAPGPGGPRHHFNGEKQVKDFIETLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGSPEQIMYYHLIPEYQTEESMYNAVRRFGKVHYDTLRLPHKMTAQEADGSVKFGHGDESAYLFDPDIYKDGRISVQGIDGVLFPPQEDEAGPVTRAQPAKVVVKQRRGKLLETACWMLGSFGQNSRFMSCQ* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1036 450 SUPERFAMILY FAS1 domain 31 177 IPR036378 -
Pvu11g1036 450 SUPERFAMILY FAS1 domain 237 404 IPR036378 -
Pvu11g1036 450 ProSiteProfiles FAS1/BIgH3 domain profile. 28 174 IPR000782 -
Pvu11g1036 450 Gene3D FAS1 domain 251 404 IPR036378 -
Pvu11g1036 450 ProSiteProfiles FAS1/BIgH3 domain profile. 258 401 IPR000782 -
Pvu11g1036 450 Gene3D FAS1 domain 35 179 IPR036378 -
Pvu11g1036 450 SMART fasc_3 67 177 IPR000782 -
Pvu11g1036 450 SMART fasc_3 299 404 IPR000782 -
Pvu11g1036 450 MobiDBLite consensus disorder prediction 197 253 - -
Pvu11g1036 450 Pfam Fasciclin domain 40 176 IPR000782 -
Pvu11g1036 450 Pfam Fasciclin domain 283 402 IPR000782 -
Pvu11g1036 450 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 1 450 - -
Pvu11g1036 450 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 1 450 IPR044654 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1036 Pvu-Chr11 10929013 10932595 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1036 - - gmx:100790599 787.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1216 5 33831763 33835341 Pvu11g1036 11 10929013 10932595 PCT