Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1203 TGCTTGCATTGCACGTCTAAAAACAAAAAAGCACTTATTTACATTACGTATGAACAGGTTATATTAGAAAACAAGGAAGGTCTCTTTGATGGGTTGCCTTACTTAATCTATGTATCCAGAGAAAAGAGACCTCAGTACAATCACAATTACAAAGCCGGTGCTATGAATGTCTTGACAAGAGTCTCTGGATTGATGAGCAATGCTCCCTTTATGTTGAACGTAGACTGTGACATGATTGTGAACAATCCCAAGATTGTTCTACACGCTCTGTGCATTTTGATGGATTCACAAAAAGGGAAAGAAGTTGCTTTCGTTCAATGTTTCCAACAATTCATCGATGGAATAAAAGATGACCCTTTTGGAAATCAGATGGTGACTGCATTTGAGTACATAATACAGGGCATAGGTGGACTTCAAGGACCTTTCTATGTAGGAACAAACACCTTCCATAGAAGAAACACTATTTACGGTCTTTATCCTCATGAAATTGAAACCATTATAAAAGGAAAATCAGAAGAAAATATATTAATACAACAATTTGGAAGCTCAAAAGAGTTCATCAAATCAGCAGCCCATGTTGTGGGAGGGAATGGATATTCAGCTAATGATATTACTCCTTCCAACTTTATTGAGGCAGCAACCCAAGTTGCTAATTGTGAATATGAATGTGGCACTTTCTGGGGTAAACAGTTGGGCTGGTTGTATGGATCAATCTCAGAAGATGTACCAACAGGGTTGAATATTCACAGAAAAGGTTGGAGATCAGAGTGTTGTACCCCAGATCCAATTGCCTTCACAGGATGTGCTCCTGGAGGATTACTCTCTACAATGATACAACAAAAGAGATGGGCCTCAGGCCTTACTGTAGTCTTTTTTGGAAAGCATTCTCCTCTTATGGCCATGCTCTTTGGTAAGATCCAATTCAGGACATGCTTGTCTTATTTTTGGCCTACAATCTGGGGCTTGCGTGGTGCATTCCTAGTTTGCTATGTTGCTGTAATTGCATATTGCATGATTGCCAACACCAGTATCTTTCCTCAGGGACTTGGCCTTTGGATTGCAATTTCTCTTTTTGTGATTTACAACATACATACTCTATTAGAGCACCTTACAATTGGGTTGTCTATAACAAATTGGTGGAACAATCAAAGAATGTGTGTAATGAGAACCACGACTGCATGCTTTATTGGATTTTTGAGTGCTATGCTTAAGCTATCAGGGATTTCAGATACTGTGTTTGAAATAACAGAGAAGGAACACACAACTTCTGATGCTGATGGAAACAATGCAGATGCTGGAAGGTTCACGTTCGACGAGTCTCCAGTTTTTGTGGTAGGCACGACGATTTTGTTGGTGCATTTGGCAGGCATGGTGATAAAGTTATTGGGGTTGCAACCAAGTGATAGTGGAAATGGGAGTGGAATAGGAGAGTTCATTTGTAGCACATATCTGATAGTGTGTTACTTTCCATATTTGAAAGGATTGTTTGGCAGAGGAAAATATGGGATTCCCTTAACCACCATTTGCATGTCATCCGTGTTTGCATTAGTCTTTGTGCAACTTTGTAGAAGTAATATTATGAGTTGA 1587 0.3938 CLHCTSKNKKALIYITYEQVILENKEGLFDGLPYLIYVSREKRPQYNHNYKAGAMNVLTRVSGLMSNAPFMLNVDCDMIVNNPKIVLHALCILMDSQKGKEVAFVQCFQQFIDGIKDDPFGNQMVTAFEYIIQGIGGLQGPFYVGTNTFHRRNTIYGLYPHEIETIIKGKSEENILIQQFGSSKEFIKSAAHVVGGNGYSANDITPSNFIEAATQVANCEYECGTFWGKQLGWLYGSISEDVPTGLNIHRKGWRSECCTPDPIAFTGCAPGGLLSTMIQQKRWASGLTVVFFGKHSPLMAMLFGKIQFRTCLSYFWPTIWGLRGAFLVCYVAVIAYCMIANTSIFPQGLGLWIAISLFVIYNIHTLLEHLTIGLSITNWWNNQRMCVMRTTTACFIGFLSAMLKLSGISDTVFEITEKEHTTSDADGNNADAGRFTFDESPVFVVGTTILLVHLAGMVIKLLGLQPSDSGNGSGIGEFICSTYLIVCYFPYLKGLFGRGKYGIPLTTICMSSVFALVFVQLCRSNIMS* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1203 528 PANTHER CELLULOSE SYNTHASE H1-LIKE PROTEIN 18 528 - -
Pvu5g1203 528 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 14 166 IPR029044 -
Pvu5g1203 528 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 18 528 - -
Pvu5g1203 528 Pfam Cellulose synthase 12 165 IPR005150 GO:0016020|GO:0016760|GO:0030244
Pvu5g1203 528 Pfam Cellulose synthase 174 521 IPR005150 GO:0016020|GO:0016760|GO:0030244
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1203 Pvu-Chr5 33611340 33613752 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1203 8 525 Glycosyltransferase AT2G32540 40.631 3.91e-129 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1203 - - pvu:PHAVU_005G1163000 1091.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1203 5 33611340 33613752 Pvu5g1203 5 33611340 33613752 ECH
Pvu5g1203 5 33611340 33613752 Pvu11g1047 11 11071204 11076931 PCT