Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1184 ATGGCGACTCTGGATTCCGACGTGACGATGGTTCCGGCCGGCGAACCCTCCAGCAGCACCGGTCCTTCTTGTTCCAGCAAGAAGCCCAAGCGATTCGAGATCAAGAAGTGGAATGCCGTTGCTCTATGGGCTTGGGATATCGTTGTGGACAATTGTGCTATCTGCAGGAACCATATCATGGATCTCTGTATTGAGTGCCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTGTAGCTTGGGGAGTTTGTAACCATGCTTTTCACTTCCATTGCATAAGCCGATGGCTGAAGACCCGTCAAGTATGTCCGCTAGATAATAGCGAGTGGGAGTTTCAGAAATATGGTCACTAG 357 0.5154 MATLDSDVTMVPAGEPSSSTGPSCSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH* 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1184 118 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 19 118 IPR013083 -
Pvu5g1184 118 SUPERFAMILY RING/U-box 30 115 - -
Pvu5g1184 118 CDD mRING-H2-C3H2C2D_RBX1 50 111 - -
Pvu5g1184 118 ProSiteProfiles Zinc finger RING-type profile. 63 108 IPR001841 -
Pvu5g1184 118 MobiDBLite consensus disorder prediction 1 28 - -
Pvu5g1184 118 PANTHER RING BOX 1 118 - -
Pvu5g1184 118 MobiDBLite consensus disorder prediction 12 26 - -
Pvu5g1184 118 Pfam RING-H2 zinc finger domain 50 108 IPR024766 GO:0008270
Pvu5g1184 118 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RBX1 1 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1184 Pvu-Chr5 33174768 33177902 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1184 K03868 - gmx:100526919 249.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1184 5 33174768 33177902 Pvu11g1082 11 12123557 12126006 PCT