Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1082 ATGATTGTTGTTGGTAGAAACGTAGAAGACCTTAATACACTATTGTTGATTCAATTGGAGAAAGCACTGAACAAATCACCCAGAGTTCCGACCGCGAGAGAAAGGTACATGGCGACTCTTGATTCCGACGTGCCAATGATTCCGGCCGGCGAGCCATCGAGCAGCGCCGGCCCGTCTTCCAAGAAGCCCAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCGCACTCTGGGCTTGGGACATCGTTGTCGATAACTGTGCCATCTGCCGGAACCACATCATGGATCTCTGCATCGAGTGCCAAGCCAACCAGGCCAGCGCAACTAGCGAAGAATGCACTGTGGCGTGGGGAGTTTGTAATCATGCTTTTCACTTCCACTGCATTAGTCGATGGCTCAAGACCCGTCAAGTTTGTCCTCTAGATAACAGTGAGTGGGAGTTTCAGAAATACGGCCACTAG 459 0.5142 MIVVGRNVEDLNTLLLIQLEKALNKSPRVPTARERYMATLDSDVPMIPAGEPSSSAGPSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH* 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1082 152 ProSiteProfiles Zinc finger RING-type profile. 97 142 IPR001841 -
Pvu11g1082 152 CDD mRING-H2-C3H2C2D_RBX1 84 145 - -
Pvu11g1082 152 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 54 152 IPR013083 -
Pvu11g1082 152 Pfam RING-H2 zinc finger domain 84 142 IPR024766 GO:0008270
Pvu11g1082 152 SUPERFAMILY RING/U-box 64 149 - -
Pvu11g1082 152 PANTHER RING BOX 37 152 - -
Pvu11g1082 152 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RBX1 37 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1082 Pvu-Chr11 12123557 12126006 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1082 K03868 - gmx:100789570 253.832
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1184 5 33174768 33177902 Pvu11g1082 11 12123557 12126006 PCT