Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1152 ATGTCCAAGATGTTGGGACTGTTTGTTGGTCTTTTGTTTGTGGGGTTGGCTGCCTCAGCCAAGTTTGATGAACTCTTCCAGCCCAGTTGGGCCATGGATCATTTCATCCATGAAGGAGAACTCCTCAAACTCAAACTTGACAACTATTCTGGTGCTGGATTTGGATCCAAGAGCAAGTACATGTTTGGGAAAGTGACCATCCAGCTCAAGCTTGTGGAGGGTGACTCTGCTGGAACTGTGACTGCATTCTATATGTCATCAGACGGTCCAACTCACAACGAATTTGATTTCGAGTTTCTGGGCAACACCACTGGGGAACCTTACTCGGTGCAAACGAACGTGTACGTGAACGGTGTTGGTAACAGGGAGCAGAGACTGAACCTGTGGTTCGACCCCACCAAGGAATTCCACACCTACTCCATCTTCTGGAACCAGCGCCAAGTTGTATTCGAAGTGGATGGGACGCCAATAAGGGTGCATACAAATCTGGAACACAAAGGAATTCCGTTCCCAAAGGACCAAGCCATGGGTGTTTACAGCTCAATATGGAACGCAGATGATTGGGCCACCCAGGGTGGTCGTGTGAAGACAGATTGGAGCCACGCACCCTTCTTTGCCACCTACAAGGACTTCCAAATCGACGCGTGCGAGTGTCCCGTGCCAGTGTCCTCAGCCGGTACCGCCAAGAAATGTAGCAGTAGTGAGGATAAGAAGTATTGGTGGGACGAACCCACGATGTCGGAACTGAACCTGCACCAGAGCCACCAGCTTCTCTGGGTTAGGGCTAACCATATGGTCTATGACTACTGCACCGACACCGCTAGGTTCCCTGTCACACCTGCTGAGTGTGTCCATCATCGCCACCACTGA 870 0.5092 MSKMLGLFVGLLFVGLAASAKFDELFQPSWAMDHFIHEGELLKLKLDNYSGAGFGSKSKYMFGKVTIQLKLVEGDSAGTVTAFYMSSDGPTHNEFDFEFLGNTTGEPYSVQTNVYVNGVGNREQRLNLWFDPTKEFHTYSIFWNQRQVVFEVDGTPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFFATYKDFQIDACECPVPVSSAGTAKKCSSSEDKKYWWDEPTMSELNLHQSHQLLWVRANHMVYDYCTDTARFPVTPAECVHHRHH* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1152 289 CDD GH16_XET 17 283 IPR016455 GO:0010411|GO:0016762|GO:0042546
Pvu5g1152 289 Gene3D - 14 289 - -
Pvu5g1152 289 PRINTS Glycosyl hydrolase family 16 signature 52 70 IPR008264 GO:0004553|GO:0005975
Pvu5g1152 289 PRINTS Glycosyl hydrolase family 16 signature 110 123 IPR008264 GO:0004553|GO:0005975
Pvu5g1152 289 PRINTS Glycosyl hydrolase family 16 signature 128 145 IPR008264 GO:0004553|GO:0005975
Pvu5g1152 289 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 9 287 - -
Pvu5g1152 289 PIRSF EndGlu_transf 2 288 IPR016455 GO:0010411|GO:0016762|GO:0042546
Pvu5g1152 289 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 20 208 IPR000757 GO:0004553|GO:0005975
Pvu5g1152 289 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 9 287 IPR044791 GO:0004553
Pvu5g1152 289 Pfam Glycosyl hydrolases family 16 25 200 IPR000757 GO:0004553|GO:0005975
Pvu5g1152 289 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 236 283 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Pvu5g1152 289 SUPERFAMILY Concanavalin A-like lectins/glucanases 22 287 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1152 Pvu-Chr5 32591257 32593439 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1152 52 288 Glycoside Hydrolase AT4G03210 78.903 5.61e-144 403
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1152 K08235 - gmx:100801567 578.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g1102 11 12562754 12565150 Pvu5g1152 5 32591257 32593439 PCT