Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1102 ATGCTCTTCTGCTCCCTTTTAAGGATGTTTCGCTCCTTAGGATTGTTTGTGGGTCTTATGTTGGTTGTGGGGGTGGCTAATGCCGTGCCTTCCACCTCCAACTTTGATAAACTTTTTCAACCAAGTTGGGCTTTTGATCACTTCGTTCACGAAGGAGATCTCCTCAAAATCAAACTTGACAATTATTCTGGAGCTGGTTTTGGATCCAAAAGCAAGTATATGTATGGGAAAGTGACCATCCAGCTTAAGCTGGTGGAAGGTGACTCTGCTGGGACTGTTACTGCTTTCTATATGTCATCGGAGGGTCCAAACCACAACGAGTTTGATTTTGAGTTTCTAGGCAACACCACAGGGGAACCATACTCAGTCCAAACTAACCTGTATGTGAACGGAGTGGGCAACAGGGAACAGAGACTTAACCTTTGGTTCGACCCTACCAAGGATTTCCACACATACTCTATCTTCTGGAATCAGCGTCAAGTTGTGTTTTTGGTGGATGAAACGCCAATAAGAGTGCACACAAACATGGAGCACAAGGGAATCCCTTATCCGAAAGACCAACCCATGGGTGTGTACAGTTCTATATGGAATGCTGACGATTGGGCCACCCAGGGTGGCCGTGTGAAGACGAATTGGAGCCACGCACCCTTCTTTGCCACCTTCAAGAACTTTGAAATCAATGCTTGTGAATGCCCTGTGTCAGTGGCTGCAACGGATAACTCTAAACGGTGCAGTAGCAGTGTGGGTAAGAAATATTGGTGGGATGAGCCAAATTTGGCAGAACTGAACTTGCACCAGAGCCATCAGCTTATGTGGGTTAGGGCCAGACACATCTTCTATGACTATTGCTCTGACACTGCTAGGTTCCCAGTCACGCCAGCTGAGTGTGTCCATCACCGTCACAACTGA 909 0.4697 MLFCSLLRMFRSLGLFVGLMLVVGVANAVPSTSNFDKLFQPSWAFDHFVHEGDLLKIKLDNYSGAGFGSKSKYMYGKVTIQLKLVEGDSAGTVTAFYMSSEGPNHNEFDFEFLGNTTGEPYSVQTNLYVNGVGNREQRLNLWFDPTKDFHTYSIFWNQRQVVFLVDETPIRVHTNMEHKGIPYPKDQPMGVYSSIWNADDWATQGGRVKTNWSHAPFFATFKNFEINACECPVSVAATDNSKRCSSSVGKKYWWDEPNLAELNLHQSHQLMWVRARHIFYDYCSDTARFPVTPAECVHHRHN* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1102 302 Pfam Glycosyl hydrolases family 16 38 213 IPR000757 GO:0004553|GO:0005975
Pvu11g1102 302 Gene3D - 21 302 - -
Pvu11g1102 302 PRINTS Glycosyl hydrolase family 16 signature 65 83 IPR008264 GO:0004553|GO:0005975
Pvu11g1102 302 PRINTS Glycosyl hydrolase family 16 signature 123 136 IPR008264 GO:0004553|GO:0005975
Pvu11g1102 302 PRINTS Glycosyl hydrolase family 16 signature 141 158 IPR008264 GO:0004553|GO:0005975
Pvu11g1102 302 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 13 300 - -
Pvu11g1102 302 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 13 300 IPR044791 GO:0004553
Pvu11g1102 302 CDD GH16_XET 30 296 IPR016455 GO:0010411|GO:0016762|GO:0042546
Pvu11g1102 302 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 250 296 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Pvu11g1102 302 SUPERFAMILY Concanavalin A-like lectins/glucanases 35 300 IPR013320 -
Pvu11g1102 302 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 23 221 IPR000757 GO:0004553|GO:0005975
Pvu11g1102 302 PIRSF EndGlu_transf 2 301 IPR016455 GO:0010411|GO:0016762|GO:0042546
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1102 Pvu-Chr11 12562754 12565150 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1102 65 301 Glycoside Hydrolase AT4G03210 74.684 9.65e-137 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1102 K08235 - gmx:100785982 566.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g1102 11 12562754 12565150 Pvu5g1152 5 32591257 32593439 PCT