Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1125 ATGGCGGCTCTCACTTCTCTCTCTTTCTCTGCAGTCACTCATTGCCCAGAAAGAAAAAAACTGACCCTTTCCTCCACTCGTTTTCTCACCTCCTCTTCAGACTTCTTTGGCCTCCGCACCCATTTCTCCTACCACCATGTTCGCCTTCCAGCGTCCAACTCCACTTCTAACATGGTTTTTCAATGCATGTCTTCTGTCACAGATGCTCCCACTGTTTCGGAGACAAAGCTAAATTTCCTCAAGGCATATAAGCGACCAATCCCTAGTATCTACAACACAGTGCTGCAGGAGCTAATTGTGCAGCAACATTTAATGAAATACAAGAGATCATACCGCTATGACCCTGTATTTGCTCTTGGTTTTGTCACTGTATATGATAAACTCATGGAAGGGTATCCCAGTGATGAGGACCGAGATGCCATCTTCCAAGCCTACATTAAGGCATTGAAGGAAGATCCACAAGAATACAGAATAGATGCACGGAAGTTGGAAGAGTGGGCTATGGTTCAAAACTCAAGTTCCCTTCCTGAGTTTTCATCCAAAGAAGGAGAAGTTGAAGGGATTTTAAAGGACATAGCAGAAAGAGCAGCGGGGAAAGATGAATTCAGTTATAGTCGTTTCTTTGCAATCGGACTCTTTCGTCTTCTTGAGTTGGCAAATGCTACGGAACCAACAATTTTGGAGAAGCTTTGTGCGGCTTTGAACATCAACAAAAGAAGTGTTGATCGGGACTTGGACGTGTATCGTAACCTGCTCTCAAAGTTGGTTCAAGCAAAAGAGCTGCTGAAGGAGTATGTTGACAGGGAGAAGAAGAAAAGGGATGAAAGGGCTGAACCACAGAAGGCTAATGAGGCCATCACAAAATGTTTGGGTGAACAACTTCCAGGTCTGTAG 894 0.4441 MAALTSLSFSAVTHCPERKKLTLSSTRFLTSSSDFFGLRTHFSYHHVRLPASNSTSNMVFQCMSSVTDAPTVSETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMKYKRSYRYDPVFALGFVTVYDKLMEGYPSDEDRDAIFQAYIKALKEDPQEYRIDARKLEEWAMVQNSSSLPEFSSKEGEVEGILKDIAERAAGKDEFSYSRFFAIGLFRLLELANATEPTILEKLCAALNINKRSVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAEPQKANEAITKCLGEQLPGL* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1125 297 TIGRFAM PS_II_psb29: photosystem II biogenesis protein Psp29 67 273 IPR017499 GO:0010207|GO:0015979
Pvu5g1125 297 Coils Coil 248 278 - -
Pvu5g1125 297 PANTHER PHOTOSYSTEM II BIOGENESIS PROTEIN 1 287 - -
Pvu5g1125 297 Hamap Protein Thf1 [thf1]. 66 274 IPR017499 GO:0010207|GO:0015979
Pvu5g1125 297 PANTHER PROTEIN THYLAKOID FORMATION 1, CHLOROPLASTIC 1 287 IPR017499 GO:0010207|GO:0015979
Pvu5g1125 297 Pfam Thylakoid formation protein 71 276 IPR017499 GO:0010207|GO:0015979
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1125 Pvu-Chr5 31750206 31753064 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1125 - - gmx:100814341 501.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1125 5 31750206 31753064 Pvu5g1125 5 31750206 31753064 ECH
Pvu5g1125 5 31750206 31753064 Pvu11g1139 11 14289480 14293688 PCT