Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1139 ATGGCCACTGTTACTTCTTCTTTCCATTTCTCCACTCTCATCCAATCTTCTCAGAGGAACCTCACCCTCTCTTCCAATTCACCAACCTTAAGCTTCCGCGTTGGTTTCTCATGCCACTATCTTGGAGTTCGAGCTTCCAGTTATGCTTCCAAAATGGTTGTTCGCTGCTCCTCTTCCTCTGTCACAGACCCTCCAACTGTTTCTGAGACAAAGTTAAATTTTCTCAAGGAATATAAGCGACCAATTCCTAGTATCTACAACACGGTGCTGCAAGAGCTCATTGTTCAGCAACATCTAATGAGATACAAGAGATCATATCGCTATGATGCTGTATTTGCCCTTGGCTTTGTCACTGTATACGAGCAACTCATGGAAGGGTATCCAAGTGATGAGGACCGAGATGCCATCTTCCAAGCATACATTAAGGCATTGAAAGAAGATCCTGAACAATACAGAGTAGATGCAAAGAAATTGGAAGAATGGGCTCGAGCACAAAACTCAACTTCACTAGTTGAGTTCTCATCCAGAGAAGGAGAAGTTGAGGGAATATTAAAGGATATTGCAGAAAGAGCAGGAGGAAAGGGGGATTTCAGTTACAGTCGTTTCTTTGCAATAGGCCTCTTTCGCCTTCTTGAGTTAGCAAATGCTATGGAACCAACAATTTTGGAAAAGCTTTGTGCGGTGTTGAATGTCAACAAAAGGAGTGTGGATCGGGACTTGGATGTGTATCGTAACTTGCTTTCTAAGTTGGTTCAAGCTAAAGAGTTGCTAAAGGAATATGTTGACAGGGAGAAAAAGAAAATAGAAGAAAGGGCTGGACCACAAAAGACTAATGAGGCCATTACACAACAGCAATTTTCTAGCCTTTAG 870 0.423 MATVTSSFHFSTLIQSSQRNLTLSSNSPTLSFRVGFSCHYLGVRASSYASKMVVRCSSSSVTDPPTVSETKLNFLKEYKRPIPSIYNTVLQELIVQQHLMRYKRSYRYDAVFALGFVTVYEQLMEGYPSDEDRDAIFQAYIKALKEDPEQYRVDAKKLEEWARAQNSTSLVEFSSREGEVEGILKDIAERAGGKGDFSYSRFFAIGLFRLLELANAMEPTILEKLCAVLNVNKRSVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKIEERAGPQKTNEAITQQQFSSL* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1139 289 Pfam Thylakoid formation protein 66 271 IPR017499 GO:0010207|GO:0015979
Pvu11g1139 289 Hamap Protein Thf1 [thf1]. 61 269 IPR017499 GO:0010207|GO:0015979
Pvu11g1139 289 Coils Coil 243 263 - -
Pvu11g1139 289 PANTHER PHOTOSYSTEM II BIOGENESIS PROTEIN 1 282 - -
Pvu11g1139 289 MobiDBLite consensus disorder prediction 268 289 - -
Pvu11g1139 289 PANTHER PROTEIN THYLAKOID FORMATION 1, CHLOROPLASTIC 1 282 IPR017499 GO:0010207|GO:0015979
Pvu11g1139 289 TIGRFAM PS_II_psb29: photosystem II biogenesis protein Psp29 62 267 IPR017499 GO:0010207|GO:0015979
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1139 Pvu-Chr11 14289480 14293688 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1139 - - gmx:100779964 497.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g1139 11 14289480 14293688 Pvu11g1139 11 14289480 14293688 ECH
Pvu5g1125 5 31750206 31753064 Pvu11g1139 11 14289480 14293688 PCT