Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1001 ATGGCTTCGGGGAAAACTGATGGAGATGATGGGGGAAAAAGGGAGCAGAGATACACCGAGAGAAAGGTCTACACTAGGAAAGCGTTTAAAGGTCTTAAGAACAAAGGCAACGCCGTGAACGTCGCTCCTCATACTACCGCTGCAACTATTACCAACGACGGCGACGACAGTTCGGGTACCGTTACCGCCGTCTATTACAACAGTAAGGATAACATTACTGTCGATAACGGTAACCCTAGGTCTAAGGATAATTGCAATAACGCCTTGGTTCAGCAGGGGCTGGAGGATGGGAATTCAGCTCGGCCGTACGTAAACCGTGCTTCGGATGAGCCTTCTAGTGTTCCGGCCATGCTAGAGTGGTTGCCGGGACCGGAAAGTTTTGTTAGGCTAAGTTTGAATTGGCGGTCGAAGCCGGAGTTAAGGAGGAGGCTTGAGAGTGAGCTCAATACGGTCAGGAATTTGGTGAGTAGGATTGAAGAGAAGTTGGGGGTACTTGGTCGGTATGGTAATTCAGATGTGATGGTGGATAGTGGGATTGGTAAAGGGGTTGGAACTAAGCGTGCTCACTCGGAGGTGGCATCGGCTGTTGTTCCACCGCGAGAGCATTCTCAACCTTTGCATCAGTTGAGTTTGTCAGTGTTGGAGAATAGTCAAGGGGTTGGAGAAATCGTTGAGAAGGAGAAGAGGACGCCCAAGGCAAACCAGTTCTATCGCAATTCGGAGTTCTTGCTTGGGAAAGAAAGGTTTCCACCTTCAGGGAGTAACAAGAAGTCTAAATTGAATGGGAAGAAGCATGATGCAGGTGAGATGGGACATGGAATGGGATTGAAGCTTTTGAAGAGTTGTGGTTCGTTGCTTGAGAAATTGATGAAGCACAAGCATGGTTGGGTGTTTAATACTCCAGTTGACGTTGAGGGTCTTGGTTTACACGATTATTTTGATATCATCCCGCATCCAATGGACCTGGGTGCTGTGAAGTCACGGCTGAACAAGAATTTGTACAAATCACCCAAGGAGTTTGCTGAGGATGTGAGACTTACATTTCGCAATGCCATGACTTATAATCCCAAAGGACAAGACGTTCATGTAATGGCTGAGCAGCTGTCAGATGTATTTGAGGAGAGATGGGCTGTAATAGAGTCAAATTACAACCACGACATGAGATTTGACCTAGATTATGGTGCGGCTGGTCGTTCACCTTCACTTCTGTCTAGAAAGGCTCCTGCATTTAGACCCCCGCCTATTGATATGAGACGGATTTTGGATAGGTCAGAATCAATGACGCAACCTCCAAAAATCATGAGTATCACTCCTTCGTCTCGAACCCCTGCTCCCAAAAAGCCCAAGGCCAAAGACCCTCATAAAAGAGACATGACATATGAGGAAAAGCAAAAACTCAGCACAAATCTTCAGGATCTACCTTCTGAGAAGCTAGATGCCATTGTACAGATCATTAAGAAGAGAAACTCAGCACTTTCCCAGCATGATGAAGAAATTGAAGTGGACATTGATAGTGTGGATACGGAGACTCTCTGGGAGCTTGATAGATTTGTGACCAACTATAAGAAAAGCTTGAGCAAAAATAAGAGGAAGCTTGAACTTGCTATTCAAGCTAGAGCACAAGCTGAGAAGAATGCCCTGCAGAAGATTCAGGCACCAGTTATGGTTGAGATTTCAAAAGAAGCACAAACAGATGAAAGAAATATTCCCCAATCCTTGCCCGTGCAAGAAGAAGTTCAAGCGGATGGGAGTAAGACAAGTGGTTCAAGCAGCTCCAGCAGTGATTCAGGCTCTTCATCAAGTATTCTGATACTGGTAGTTCTTCAGCCTCTGGGTCTGATGCTGAGTAATAGAGAACCTAAATTCATCTGTCAGGCAGAATCACAACCTCCAAAATTTTATTTCGCTATATGCTCTGCTTTGTACTCCCATCTTTTCATTATGTAG 1947 0.4551 MASGKTDGDDGGKREQRYTERKVYTRKAFKGLKNKGNAVNVAPHTTAATITNDGDDSSGTVTAVYYNSKDNITVDNGNPRSKDNCNNALVQQGLEDGNSARPYVNRASDEPSSVPAMLEWLPGPESFVRLSLNWRSKPELRRRLESELNTVRNLVSRIEEKLGVLGRYGNSDVMVDSGIGKGVGTKRAHSEVASAVVPPREHSQPLHQLSLSVLENSQGVGEIVEKEKRTPKANQFYRNSEFLLGKERFPPSGSNKKSKLNGKKHDAGEMGHGMGLKLLKSCGSLLEKLMKHKHGWVFNTPVDVEGLGLHDYFDIIPHPMDLGAVKSRLNKNLYKSPKEFAEDVRLTFRNAMTYNPKGQDVHVMAEQLSDVFEERWAVIESNYNHDMRFDLDYGAAGRSPSLLSRKAPAFRPPPIDMRRILDRSESMTQPPKIMSITPSSRTPAPKKPKAKDPHKRDMTYEEKQKLSTNLQDLPSEKLDAIVQIIKKRNSALSQHDEEIEVDIDSVDTETLWELDRFVTNYKKSLSKNKRKLELAIQARAQAEKNALQKIQAPVMVEISKEAQTDERNIPQSLPVQEEVQADGSKTSGSSSSSSDSGSSSSILILVVLQPLGLMLSNREPKFICQAESQPPKFYFAICSALYSHLFIM* 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1001 648 SUPERFAMILY Bromodomain 269 384 IPR036427 GO:0005515
Pvu5g1001 648 MobiDBLite consensus disorder prediction 423 459 - -
Pvu5g1001 648 ProSiteProfiles Bromodomain profile. 290 362 IPR001487 GO:0005515
Pvu5g1001 648 CDD Bromo_plant1 278 376 IPR037377 -
Pvu5g1001 648 Coils Coil 525 545 - -
Pvu5g1001 648 MobiDBLite consensus disorder prediction 563 598 - -
Pvu5g1001 648 SMART bromo_6 271 381 IPR001487 GO:0005515
Pvu5g1001 648 Gene3D - 451 536 IPR038336 -
Pvu5g1001 648 Gene3D - 275 390 IPR036427 GO:0005515
Pvu5g1001 648 ProSiteProfiles NET domain profile. 448 529 IPR027353 -
Pvu5g1001 648 MobiDBLite consensus disorder prediction 247 268 - -
Pvu5g1001 648 Pfam Bromodomain extra-terminal - transcription regulation 458 519 IPR027353 -
Pvu5g1001 648 PANTHER TRANSCRIPTION FACTOR GTE4 1 601 - -
Pvu5g1001 648 MobiDBLite consensus disorder prediction 7 21 - -
Pvu5g1001 648 MobiDBLite consensus disorder prediction 445 459 - -
Pvu5g1001 648 MobiDBLite consensus disorder prediction 565 598 - -
Pvu5g1001 648 MobiDBLite consensus disorder prediction 1 21 - -
Pvu5g1001 648 PRINTS Bromodomain signature 293 306 IPR001487 GO:0005515
Pvu5g1001 648 PRINTS Bromodomain signature 309 325 IPR001487 GO:0005515
Pvu5g1001 648 PRINTS Bromodomain signature 325 343 IPR001487 GO:0005515
Pvu5g1001 648 PRINTS Bromodomain signature 343 362 IPR001487 GO:0005515
Pvu5g1001 648 PANTHER OSJNBA0053K19.4 PROTEIN 1 601 - -
Pvu5g1001 648 Pfam Bromodomain 284 366 IPR001487 GO:0005515
Pvu5g1001 648 Coils Coil 141 161 - -
Pvu5g1001 648 MobiDBLite consensus disorder prediction 428 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1001 Pvu-Chr5 28707618 28710788 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1001 - - gmx:100781720 832.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1001 5 28707618 28710788 Pvu5g1001 5 28707618 28710788 ECH
Pvu5g1001 5 28707618 28710788 Pvu11g1406 11 30945933 30950992 PCT