LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu5g0992	ATGGCGGCTGCGACGACGTCGTGTTCTTCTGCAATCTATGCCGCCTCCGAAACCCTAGCCAAACCTTCTTCCAGAAGCTTCTCCGCTACCAGCCTCGCTCTGCAATCCTCGTCTTCCAAACTCGCCATCAAATCCCTAAGGCTGAGCGGATGCGGCTCTGCTCTCGGCGCTCGTATGGTGGCGGCGCCAGCTGTGAAGGCCCCTGCGCTGCTCGATTTCGACTCGACGGTTTTCAAGAAGGAGAAGATTAACCTCGCCGGACACGACGAGTACATCGTGAGAGGAGGCAGGGATTTGTTCCACCTTTTGCCCGACGCTTTCAAGGGGATCAAGCAGATTGGTGTCATCGGCTGGGGATCTCAGGGACCTGCCCAGGCTCAGAATCTAAGGGACTCGCTTGCTGAAGCAAAGTCTAATATTGTGGTCAAGATTGGACTCAGGAAAGGTTCTCGTTCCTTTGCTGAAGCTCGGGCAGCTGGGTTTACTGAAGAGAGTGGGACTCTTGGTGACATATGGGAAACTGTATCGGGCAGTGATCTTGTGATGTTGTTAATTTCTGATTCCGCACAGGCTGATAATTATGAAAAAATATTTTCTCACATGAAACCAAACAGCATACTTGGGCTTTCCCATGGTTTTCTTCTTGGGCATTTGCAGTCAATTGGACTTGACTTTCCTAAGAACATTAGTGTAATTGCTGTGTGCCCAAAGGGGATGGGTCCTTCTGTAAGGAGGCTCTATGTGCAAGGCAAAGAAATAAATGGTGCTGGAATCAATGCAAGTTTTGCCGTCCACCAGGATGTGGATGGTAGGGCTACTGATGTTGCTTTGGCATGGTCTGTTGCCCTTGGTTCTCCATTCACTTTCGCCACTACATTAGAGCAAGAATACAAGAGTGATATCTTTGGAGAGAGAGGCATTTTACTTGGCGCTGTTCATGGAGTTGTGGAATCCTTGTTTAGGAGATACACTGAGATGGGAATGGACGAAGATCTGGCGTATAAGAATACTGTTGAGTCTATAACTGGAATTATATCTAGAACCATCTCAACCAAGGGTATGCTAGCTGTATACAATGCTTTATCTGAAGATGAGAAAAGGATATTTGAGAAAGCTTACAGTGCTTCTTATTATCCTTGCATGGACATTCTGTATGAGTGCTACGAGGATGTAGCCAGTGGTAGCGAGATTCGCAGTGTTGTTTTGGCTGGACGTCGCTTTTATGAGAAAGAGGGTCTGGCTGCTTTCCCCATGGGTAACATTGATCAAACCCGCATGTGGAAGGTTGGCGAGCGTGTCCGTTCTACAAGACCAGCAGGTGATCAAGGCCCATTATATCCTTTTACTGCTGGTGTCTTTGTGGCATTGATGATGGCCCAGATTGAGATCCTGAGGAAGAAAGGGCATTCCTACTCCGAAATCATTAATGAGAGTGTTATCGAGGCTGTTGATTCTTTGAATCCTTTCATGCATGCTCGTGGTGTTTCTTTCATGGTTGATAACTGCTCAACCACGGCTAGATTGGGTTCGAGGAAATGGGCTCCACGATTTGACTACATTCTTACCCAGCAGGCCTTGGTGGCGGTGGACAATGGAACACCTGTTAACCAGGACTTACTTGGCAACTTCCTTTCAGACCCAGTGCATAGAGCCATTGAAGTTTGCGCCAAACTGAGACCCACAGTAGACATTTCTGTGCCAGCAGATGCAGACTTCGTTCGTCCAGAGTTGCGCCACGCCAGCAATTAG	1749	0.4808	MAAATTSCSSAIYAASETLAKPSSRSFSATSLALQSSSSKLAIKSLRLSGCGSALGARMVAAPAVKAPALLDFDSTVFKKEKINLAGHDEYIVRGGRDLFHLLPDAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSNIVVKIGLRKGSRSFAEARAAGFTEESGTLGDIWETVSGSDLVMLLISDSAQADNYEKIFSHMKPNSILGLSHGFLLGHLQSIGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINASFAVHQDVDGRATDVALAWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGVVESLFRRYTEMGMDEDLAYKNTVESITGIISRTISTKGMLAVYNALSEDEKRIFEKAYSASYYPCMDILYECYEDVASGSEIRSVVLAGRRFYEKEGLAAFPMGNIDQTRMWKVGERVRSTRPAGDQGPLYPFTAGVFVALMMAQIEILRKKGHSYSEIINESVIEAVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVDNGTPVNQDLLGNFLSDPVHRAIEVCAKLRPTVDISVPADADFVRPELRHASN*	583

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu5g0992	582	Gene3D	-	287	560	IPR013328	GO:0016491
	Pvu5g0992	582	PANTHER	KETOL-ACID REDUCTOISOMERASE	6	581	-	-
	Pvu5g0992	582	PANTHER	KETOL-ACID REDUCTOISOMERASE, MITOCHONDRIAL	6	581	IPR013023	GO:0009082\|GO:0016491
	Pvu5g0992	582	PIRSF	Ilv5_plant	1	581	IPR016206	GO:0004455
	Pvu5g0992	582	Pfam	Acetohydroxy acid isomeroreductase, NADPH-binding domain	111	285	IPR013116	-
	Pvu5g0992	582	Gene3D	-	59	286	-	-
	Pvu5g0992	582	ProSiteProfiles	KARI C-terminal domain profile.	451	577	IPR000506	GO:0004455\|GO:0009082
	Pvu5g0992	582	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	71	289	IPR036291	-
	Pvu5g0992	582	ProSiteProfiles	KARI N-terminal domain profile.	93	291	IPR013116	-
	Pvu5g0992	582	ProSiteProfiles	KARI C-terminal domain profile.	292	440	IPR000506	GO:0004455\|GO:0009082
	Pvu5g0992	582	SUPERFAMILY	6-phosphogluconate dehydrogenase C-terminal domain-like	294	579	IPR008927	-
	Pvu5g0992	582	Pfam	Acetohydroxy acid isomeroreductase, catalytic domain	451	520	IPR000506	GO:0004455\|GO:0009082
	Pvu5g0992	582	Pfam	Acetohydroxy acid isomeroreductase, catalytic domain	294	438	IPR000506	GO:0004455\|GO:0009082

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu5g0992	Pvu-Chr5	28628188	28632208	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu5g0992	K00053		-	gmx:100812763	1017.3

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pvu5g0992	5	28628188	28632208	Pvu5g0992	5	28628188	28632208	ECH
	Pvu5g0992	5	28628188	28632208	Pvu11g1389	11	30603878	30608428	PCT