Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0958 ATGTGGAGAGATCCGGGAGTTTCAGCTGATTCTTTCTATGAAATCCGCCCCGAATGTACCGATGTTCCCATTTCTCGATTTAAAATCAAGGCTGGTAAAACACTAAGTGCAAGAAAATGGCAAGCTGCATTTACTCGAGAAGGGTATCTAGATATAGGCAAGACTCTAAGCCGAATCTACCGTGGGGGAGTCCATCCATCTATTAGGAGAGAAGTTTGGGAATTTCTACTTGGTTGCTATGATCCCAAGAGTACATTTGAGGAAAGAGATCAGATAAGACATCGCCGAAGAATGCAATATGCTACAATTAAAGAAGAATGCCGCCAATTGTTTCCTCTTGTTGGAAGTGGTAGATTTGTCACAGCACCTGTTGTTACTGAAGATGGTCTGCCAATTCAAGATCCATTGGTTCTGAAAGAAACAAATACAGCCAAGGGATTGGCAGTACATAATCAAGATAATAATAATCATTCAAGAATGGTTGCTACAAATAGTTTAAAGAAGGTGACAGACAAGATAGTAGTCCAGTGGCTGTTAACTCTCCATCAAATAGGTCTTGATGTGGTTCGCACTGATAGGACATTAGTTTTTTATGAGAGGCAAGAAAATCTGTCAAAATTATGGGATGTTCTATCTGTTTATGCCTGGATAGATAAAGACGTTGGCTATGGTCAAGGAATGTGTGACCTATGCTCCCCTATGATAATTCTTCTTGATGATGAAGCAGACGCATTTTGGTGCTTTGAGCGTTTGATGCGCAGGCTTCGCGGCAATTTTAGATGCACCGAGAGCTCTGTTGGGGTGACATCACAACTAAGTGATTTGGCTTCAGTTACTCAAGTAATTGATCCAAAACTTCATAACCATTTAGAGCATCTTGGTGGAGGTGACTATCTGTTTGCTTTTCGAATGCTAATGGTTTTGTTTCGTCGAGAATTCTCTTTTTGTGATTCGTTGTTTCTTTGGGAGATGATGTGGGCCTTGGAATATGATCCTGATTTGTTCTTGATGTATGAAATGCCTGAATCAGCTACTGGACAAGCTGTGGGCTCAAAAGGGAAATCAAAATCAATACGTCAATGTGGAAAGTATGAGAGAGAATTTTTGAAGAGTGGATCAAAGAATGCTTCTGAAGCCCCTCTTCCTATGTCTGTTTTCCTTGTTGCTAGTGTATTGAAAGATAAAAGTGCAAAACTACTCCAAGAAGCACGGGGTTTGGATGATGTTGTCAAGATTTTGAATGACATAACTGGGAATCTAGATGCCAAAAAAGCTTGCAGTGGGGCTATGAAACTTCACAAGAAATATTTAAAAAAGGCCAAGAAACACTAG 1332 0.4017 MWRDPGVSADSFYEIRPECTDVPISRFKIKAGKTLSARKWQAAFTREGYLDIGKTLSRIYRGGVHPSIRREVWEFLLGCYDPKSTFEERDQIRHRRRMQYATIKEECRQLFPLVGSGRFVTAPVVTEDGLPIQDPLVLKETNTAKGLAVHNQDNNNHSRMVATNSLKKVTDKIVVQWLLTLHQIGLDVVRTDRTLVFYERQENLSKLWDVLSVYAWIDKDVGYGQGMCDLCSPMIILLDDEADAFWCFERLMRRLRGNFRCTESSVGVTSQLSDLASVTQVIDPKLHNHLEHLGGGDYLFAFRMLMVLFRREFSFCDSLFLWEMMWALEYDPDLFLMYEMPESATGQAVGSKGKSKSIRQCGKYEREFLKSGSKNASEAPLPMSVFLVASVLKDKSAKLLQEARGLDDVVKILNDITGNLDAKKACSGAMKLHKKYLKKAKKH* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0958 443 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 152 259 - -
Pvu5g0958 443 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 1 442 - -
Pvu5g0958 443 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 38 289 IPR035969 -
Pvu5g0958 443 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 267 436 IPR035969 -
Pvu5g0958 443 PANTHER RAB-GTPASE-TBC DOMAIN-CONTAINING PROTEIN-RELATED 1 442 - -
Pvu5g0958 443 Gene3D - 265 443 - -
Pvu5g0958 443 Pfam Rab-GTPase-TBC domain 155 327 IPR000195 -
Pvu5g0958 443 SMART tbc_4 60 352 IPR000195 -
Pvu5g0958 443 ProSiteProfiles TBC/rab GAP domain profile. 63 329 IPR000195 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0958 Pvu-Chr5 27474756 27482898 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g0958 - - gmx:100805808 784.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g0958 5 27474756 27482898 Pvu5g0958 5 27474756 27482898 ECH
Pvu5g0958 5 27474756 27482898 Pvu11g1443 11 33199594 33207158 PCT