Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0945 ATGATTGAAGGTGAATTTGGGGAATCGTTGATTTTTGTGTTGTGGTTAGGATCTATTTTGGTGTTTTTGGTGATGGGGATGAGGAATGATGCACAGAAGCAACAGCTTCTTCATCAGGGTAATGGTGGTGGCAAAACCAGCGGCTTCATTCCTAGTTCTTTTCGTGCTCTTTCTAGCTACTTAAGGATTGTTTCCTCTGGTGCTTCCACTGTTGCGCGTTCTGCTGCATCTGTTGTAGCTTCATCCGTTGTGGAGAGGGATGATCTCCCCGACCATGATCAGGTTATCTGGGCCGGGTTTGACAAGTTAGAGGGTGAGGGAGAAGTTAGTCAGAAAGTACTTCTTCTAGGATATCGATCTGGCTTCCAGGTTTGGCATGTCGATGAATCAAATAATGTCCGTGACCTTGTATCCAGACATGATGGTCCTGTTTCTTTTATGCAAATGGTACCTAATCCAATTGCATCCAAAAGATCTGAAGACAATTACAGTAACAGTCGCCAGCTGTTGGTTGTTTGTACTGATGGGTTCTTTGTAGGAGGGAGCAATGTTCAGGATGGGTTGGTCACTCCTAATAATGGGAGCACTTTAAACTCACATGACCAAATGAATGGAAACTACCTGCCAACTACCGTTAGGTTTTATTCTATGAAATCCCAATCATATGTTCATGTGCTGAAGTTTAGATCTGTTGTTTATTCTGTGAGGTGCAGTCCCCGAGTAGTTGCTATTTCTCAGTCCACTCAGATTCACTGTTTCGATGCCACCACATTAATAAGGGCATATATTTTACATACCAATCCTATAGTCATGAGTGTCTCTGGTTCTGGAGGCATAGGTTATGGACCACTTGCGGTGGGACCAAGATGGCTGGCTTATAGTGGAAGTCCAGTTGCTGTCTCCAATTCAGGACATGTCAGTGCACAACATTTGATACCTTCTGCAAGTTTTTCTGGTTTTTCTTCTAATGGGAGTTTGATTGCACACTATGCCAAAGAGTCCAGCAAGCATATTGCTACTGGTATTGTATCCCTCGGAGACATGGGGTATAAGAAACTTTCCAGATACTGCTCTGATACCAATGGTTCATTACAATCTGTAAATTCTAGCTCTAAGGGCATTGGAACCATTAATAGTCATTCAACAGATGCAGATAACATTGGAATGGTTATTGTTAAAGATATTGTCTCCAGAAATGTTATTGCGCAATTTAGGGCCCACAAGAGTCCCATTTCAGCATTAAGCTTTGATCCTAGTGGTACCATTTTAGTGACAGCTTCCATTCAGGGTCATAACATAAATGTTTTCAAGATCATGCCTGTACAGGACAATTTGTCAGCTTCTGATACTGGCCCTTATGTTCATTTGTATAAGCTGCAACGTGGCTTTACAAATGCGGTTATTCAAGATATCAGTTTCAGTGATGACAGCAAGTGGATTATGATTAGTTCCTCGAGGGGCACTAGCCATCTATTTGCCATAAATCCTCAAGGAGGACATGTAAATATTCAGTCCTATGATGATGATAGTTTTACCACAAAAAATAGTGGATTAGGCACTACAGCTAATCACCCCCCGGGATGGACTCATAGTTCAGCCATGCTAAAGCCTAAACAAAAGAGTTTGGTTGTGGCTGGTCCTCCAATCACTCTTTCTGTGGTAAGCCGGATCAGGAATGGAGCCAATGGCTGGAGGGGCACCGTAACTGGTGCTGCTGCTGCTGCAACTGGTAGGAAGACTTCCCTTTCTGGGGCTATTGCTTCATCTTTTCGCAAGTATAAAAGTTCTGAAGGGAACAATTCAAAGTATCAACTGTTGGTTTTTTCACCCACTGGTTCTATGATACAATATGCTCTGCGGATGTTAACCAGTCAAGATTCAGCTGTTGTCTCTGGATTGGCTCCTGCTTATGAATCCCTTCCACAGGATGATGCAAGATTAGTAGTTGAGGCTATGCAAAAATGGAATATATGTCATAGTCGAAGAGAGCGAGAAGACAACATAGACATATATGGTGAGAATGGAATGTCCGATGCCAAAAAAATATATCCAGAGGAAATGGGGGAGGAGCACACCATTACCCCGAAAATCAGGAATGGAGTGATTAAAGTTAATCCCTCTCTTGAGGAGAAGCATCATTTATATATTTCAGAAGCTGAACTTCAAATGCATCAAGCTCAGACTTCATTATGGTCAAAACCAGAGATATATTTTCATTCAATGTTGCAAGAGCCTAACATAGAAGCTCCTTCGGAAGGCGAATTTGAGATTGAAAAGATTCCAACATGCGTGATTGAAGCTAGATCGAAAGACTTGGTTCCAATTGTGGACTATTTTCAGTCTCCAAATTTACAGCAGACAAGGACTTCTATAGATAGAAAAAGAGATGACCAACTGTCACATCATGGTTTGCGGCCATCTGGAAATGGCAGGATTTCATCCAGGACTGATGATGATGGTGATGCTCTTTCTGAGTTTAAAAGTGGGATTGAAGGAACTGAATGGGATAATCATGTTATGCCTTCTGAAACTGTGAGCTTTGTAAATAACAGTGACACCTTTAAACCAAATACTCAGCATGAGATTGTAAATAATAGAAGGGAGCACTTAAACACCGAGGCTCAACTCATGTTTGTAAATAGTGACAGAAAGCTTGAAGAATCATTTTGA 2670 0.4165 MIEGEFGESLIFVLWLGSILVFLVMGMRNDAQKQQLLHQGNGGGKTSGFIPSSFRALSSYLRIVSSGASTVARSAASVVASSVVERDDLPDHDQVIWAGFDKLEGEGEVSQKVLLLGYRSGFQVWHVDESNNVRDLVSRHDGPVSFMQMVPNPIASKRSEDNYSNSRQLLVVCTDGFFVGGSNVQDGLVTPNNGSTLNSHDQMNGNYLPTTVRFYSMKSQSYVHVLKFRSVVYSVRCSPRVVAISQSTQIHCFDATTLIRAYILHTNPIVMSVSGSGGIGYGPLAVGPRWLAYSGSPVAVSNSGHVSAQHLIPSASFSGFSSNGSLIAHYAKESSKHIATGIVSLGDMGYKKLSRYCSDTNGSLQSVNSSSKGIGTINSHSTDADNIGMVIVKDIVSRNVIAQFRAHKSPISALSFDPSGTILVTASIQGHNINVFKIMPVQDNLSASDTGPYVHLYKLQRGFTNAVIQDISFSDDSKWIMISSSRGTSHLFAINPQGGHVNIQSYDDDSFTTKNSGLGTTANHPPGWTHSSAMLKPKQKSLVVAGPPITLSVVSRIRNGANGWRGTVTGAAAAATGRKTSLSGAIASSFRKYKSSEGNNSKYQLLVFSPTGSMIQYALRMLTSQDSAVVSGLAPAYESLPQDDARLVVEAMQKWNICHSRREREDNIDIYGENGMSDAKKIYPEEMGEEHTITPKIRNGVIKVNPSLEEKHHLYISEAELQMHQAQTSLWSKPEIYFHSMLQEPNIEAPSEGEFEIEKIPTCVIEARSKDLVPIVDYFQSPNLQQTRTSIDRKRDDQLSHHGLRPSGNGRISSRTDDDGDALSEFKSGIEGTEWDNHVMPSETVSFVNNSDTFKPNTQHEIVNNRREHLNTEAQLMFVNSDRKLEESF* 890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0945 889 PANTHER BREAST CARCINOMA AMPLIFIED SEQUENCE 3 27 867 IPR045142 GO:0006914
Pvu5g0945 889 Pfam Breast carcinoma amplified sequence 3 546 774 IPR022175 -
Pvu5g0945 889 SMART WD40_4 452 493 IPR001680 GO:0005515
Pvu5g0945 889 SMART WD40_4 397 437 IPR001680 GO:0005515
Pvu5g0945 889 SMART WD40_4 219 254 IPR001680 GO:0005515
Pvu5g0945 889 Gene3D - 107 547 IPR015943 GO:0005515
Pvu5g0945 889 PANTHER AUTOPHAGY-RELATED PROTEIN 18F 27 867 - -
Pvu5g0945 889 SUPERFAMILY WD40 repeat-like 111 495 IPR036322 GO:0005515
Pvu5g0945 889 MobiDBLite consensus disorder prediction 787 825 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0945 Pvu-Chr5 26142022 26148175 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g0945 - - gmx:100784596 1370.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g0945 5 26142022 26148175 Pvu5g0945 5 26142022 26148175 ECH
Pvu5g0945 5 26142022 26148175 Pvu11g1462 11 33681120 33687304 PCT