Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1462 ATGATTGAATTTAAGGGTGGATTTGAAGAATCAGTGGTGACCCTTTTGTTGTTGTGTTTGTGGATAGCTGTTATTTTCATCTCTTTGGTTTTGGGGATGAGTAGAAATGATGGCCAGAAACAACGGCACCTTCTTCATGGAGGTGTTGCTGCTGGTACTGGTGGTAAAACCAACAGCAATGGCTTTATTCCCGGCTCCTTTCGTACTTTCTCTGGTTACCTGAAGATTGTTTCATCTGGTGCTTCTACCGTTGCTCGGTCAGCTGCTGCCTCTTTTGCATCATCGATTTTGGATAAGCATGATGTTGCTGACCGTGATCGGGTTATTTGGGCTGGGTTTGACACATTAGAGGGCCAGGGAGAAGTTATTAGACAAGTACTTCTTCTAGGCTATTGGTCTGGCTTCCAGGTTTTGGATGTTGATGATTCAAATAATGTCTGTGACCTAGTTTCCAGAAACGATGGCCCTGTTTCTTTTATGCAAATGGTACCAAGTCCAACTGTATTGAAGAAACTGGAGGACAAGTTTGTAGACAAGCGTCCATTGTTGGCTGTATGTGTGAATGATTTCTTGGCAGGAGGAGGCAATATACGTGAGGGTTTGGTTGCCACTTGCAATGGGGGCACTTTAAACCACCATGACCAAGTGAATGGAAACTATCTGCCAACTACTGTTCAATTTTATTCTATGAGGTCTCAATCATATATTCATACACTAAACTTTAGATCAGTTGTTTATTCTGTAAGATGTAGTTCTCGAGTAGTTGCTGTTTCTCTTTCCACCCAGATACACTGTTTTTCTCCCACAACTTTAGTAAGGGAGTATATTTTACATACCAATCCTATAGCAATGAGTTATCCTGGTTCGGGAGGCATTGGATTTGGACCACTGGCAGTGGGTCCTAGATGGCTGGCCTATAGTGGAAGTCCTGCTGTAATAGCCTCTTCTGGGCGTGTCAGTCCACACCATTTGACACCTTCTGCAAGCTTTCCTGGTTTTTCTTCAAATGGGAGCTTGGTTGCACACTATGCCAAAGAGTCTAGCAAGCATCTTGCTGCTGGGATTGTGACCCTTGGAGATATGGGGTACAAGAAGCTTTCTGGTTACTGCTCAGAACTTCTCCCAGATAACAGTGGTTCTATACAATCTGTAAATTCTAGCACAAAAGGAAATGGAATCATTCATGGCCATTCAACAGATGTGGAAAGTGTTGGGATGGTCATTGTAAGAGATATAGTCAGTAAAAATGTCGTTGCCCAATTTCAAGCCCACAAGAGTTCCATTTCAGCTTTATGCTTTGATCCTAGTGGGACCATCTTAGTGACTGCTTCTGTTCAGGGGCATAACATTAATGTTTTTAAGATAATGCCTGGATATGAGACAGTGTCTGCATCTGATGCTGCCCCTTCTTATGTTCATCTCTACAGGCTGCAACGAGGCTTGACAAATGCAGTTATTCAAGATATTAGTTTTAGCATTGATACCAGGTGGATTATGATTAGTTCCTCAAGGGGCACTAGCCATCTGTTTGCTATAAATCCTCAAGGAGGACCTGTAAATATTCTGTCATGTGACAATAGTTTAACAGAAAAAGATGGTTTGAATGTTATGCCTAATCAAGCAGTTCATTGGCCTCGTAGTTCAGCTGTAGAAATTTGTAAACGGCAGAGCTTCTGTGCTGCTGGTCCTCCGATCACACTCTCTGCTGTAAGCAGAATTAGGAATGGATCTAATGGATGGAGAAGCACGGTAACTGGTGCTGCTTCTGGGGCTATTGCTTCTTCTTTCCATAATTTTGAAGGCAGAAGTACCTTGGACGTTAATGGGAACTATTCCAAGGAAAAGTATCATCTATTTGTCTTTACATCCACAGGTTCAATGATACAATATGCTCTGCAGACAATTAACTGTCAAGATTCAGGTGTTGTTTCTGGATTAGTGCCTGCACATGAGTCTGCCCCTCTGACTGATGCAAGAGTAGTTGTTGAGCCTATCAAGAAGTGGAATATAAATCGAAGATATAGTTGGAGAGAGGGAGAAGAAAATATCGACATTTATGGAGACAATGGAGTTTCAGACATCGATAAAGTATATTCGGAGGACGTAAAAGATAATATCATCAGCCCTAAAATGAAGAATGTATCTGTGAAATTAAATTCATGTTCTGAGAAAGAACATCATTTGTATATTTCAGAAGCTGAACTGCAAATGCATGAAGCTAAGACACCATTGTGGGCAAAGACTGAGATATATTTTCATTCAGTGGCTAAAGAGGATACTTTGATGATGGATGAAAAGGCTGCTTCTGGAGGGGAATTTGAGATTGAAAAGATCCCGACTCGCGTGATAGAAGCTAGGTTGAAAGACTTGGTTCCAATTCTTGACTTTATTCAGACTTCAAAATTTCAATATACAAGGACTCCTGCTGTGGAAAACAAGTTGAATGCACCATTTTTGCATCAAAATTCTAAGTTGTTTGAAAAGGGAAGGATTTCACCAGGGAGTAGATCTCCTGGTTGTATGACTAATTCTGGTGGAAATATTGCTGAATTTAATGGTGGCTTTGAAGGAAATGAGTGGGATGAGGGTTCGATTCCAGCAGAAGCAGAGGGTCTTGTAAATAACAATAACACCCTTAAACCAGATACTAGGCCAGAGACTGTAAATAATAGAAGAGGGCACATAGAGATGGATGTTCATCACATGTTTGTAAATAGTGACAGAAAAGGCCTGAAACTGGAGAATCCCCATGAAGAAAAAGAAGGGGATTTTGATTGA 2778 0.4118 MIEFKGGFEESVVTLLLLCLWIAVIFISLVLGMSRNDGQKQRHLLHGGVAAGTGGKTNSNGFIPGSFRTFSGYLKIVSSGASTVARSAAASFASSILDKHDVADRDRVIWAGFDTLEGQGEVIRQVLLLGYWSGFQVLDVDDSNNVCDLVSRNDGPVSFMQMVPSPTVLKKLEDKFVDKRPLLAVCVNDFLAGGGNIREGLVATCNGGTLNHHDQVNGNYLPTTVQFYSMRSQSYIHTLNFRSVVYSVRCSSRVVAVSLSTQIHCFSPTTLVREYILHTNPIAMSYPGSGGIGFGPLAVGPRWLAYSGSPAVIASSGRVSPHHLTPSASFPGFSSNGSLVAHYAKESSKHLAAGIVTLGDMGYKKLSGYCSELLPDNSGSIQSVNSSTKGNGIIHGHSTDVESVGMVIVRDIVSKNVVAQFQAHKSSISALCFDPSGTILVTASVQGHNINVFKIMPGYETVSASDAAPSYVHLYRLQRGLTNAVIQDISFSIDTRWIMISSSRGTSHLFAINPQGGPVNILSCDNSLTEKDGLNVMPNQAVHWPRSSAVEICKRQSFCAAGPPITLSAVSRIRNGSNGWRSTVTGAASGAIASSFHNFEGRSTLDVNGNYSKEKYHLFVFTSTGSMIQYALQTINCQDSGVVSGLVPAHESAPLTDARVVVEPIKKWNINRRYSWREGEENIDIYGDNGVSDIDKVYSEDVKDNIISPKMKNVSVKLNSCSEKEHHLYISEAELQMHEAKTPLWAKTEIYFHSVAKEDTLMMDEKAASGGEFEIEKIPTRVIEARLKDLVPILDFIQTSKFQYTRTPAVENKLNAPFLHQNSKLFEKGRISPGSRSPGCMTNSGGNIAEFNGGFEGNEWDEGSIPAEAEGLVNNNNTLKPDTRPETVNNRRGHIEMDVHHMFVNSDRKGLKLENPHEEKEGDFD* 926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1462 925 Pfam Breast carcinoma amplified sequence 3 562 792 IPR022175 -
Pvu11g1462 925 SUPERFAMILY WD40 repeat-like 223 513 IPR036322 GO:0005515
Pvu11g1462 925 PANTHER BREAST CARCINOMA AMPLIFIED SEQUENCE 3 45 892 IPR045142 GO:0006914
Pvu11g1462 925 Gene3D - 333 551 IPR015943 GO:0005515
Pvu11g1462 925 PANTHER AUTOPHAGY-RELATED PROTEIN 18F 45 892 - -
Pvu11g1462 925 SMART WD40_4 414 454 IPR001680 GO:0005515
Pvu11g1462 925 SMART WD40_4 232 267 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1462 Pvu-Chr11 33681120 33687304 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1462 - - var:108340445 1579.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g1462 11 33681120 33687304 Pvu11g1462 11 33681120 33687304 ECH
Pvu5g0945 5 26142022 26148175 Pvu11g1462 11 33681120 33687304 PCT