Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g0916 ATGGCAGCACAAAACTCCCAAACCCACTTCCAAGATTTTTTGCCTGTGATGGCCAACAAGCTTGGTGGGGATGGCCTAATTGATGAACTTTGCAATGGGTTCAATCTTTTGAAGGATTCAGAAAAAGGGGTCATCACCTTTGACAGCCTCAAGAGAAATTCTGCCCTTCTAGGCCTCCAGGGCCTCAGTGATGAGGATCTTCGCTCCATGCTTGAGGAAGGTGACTTTGATGGTGATGGGGCGCTCAATCAGTTGGAGTTCTGTGTTTTGATGTTCAGACTTAGTCCTGAACTCATGGAAGGTTCAAAGTTGTGGTTGGAGCAAGTCCTTCAACAAGAACTCAGAGATTACCTATAA 357 0.4594 MAAQNSQTHFQDFLPVMANKLGGDGLIDELCNGFNLLKDSEKGVITFDSLKRNSALLGLQGLSDEDLRSMLEEGDFDGDGALNQLEFCVLMFRLSPELMEGSKLWLEQVLQQELRDYL* 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g0916 118 Pfam EF-hand domain pair 41 93 IPR002048 GO:0005509
Pvu5g0916 118 Gene3D - 7 117 - -
Pvu5g0916 118 PANTHER CALCIUM-BINDING PROTEIN KIC 1 117 IPR044205 GO:0005509
Pvu5g0916 118 ProSitePatterns EF-hand calcium-binding domain. 75 87 IPR018247 -
Pvu5g0916 118 SUPERFAMILY EF-hand 5 91 IPR011992 -
Pvu5g0916 118 ProSiteProfiles EF-hand calcium-binding domain profile. 62 97 IPR002048 GO:0005509
Pvu5g0916 118 PANTHER CALCIUM-BINDING PROTEIN KRP1 1 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g0916 Pvu-Chr5 24354170 24354813 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g0916 4 114 EF-hand Containing Proteins AT4G27280 66.071 3.11e-50 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g0916 K24345 - gmx:100500465 209.534
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g0916 5 24354170 24354813 Pvu5g0916 5 24354170 24354813 ECH
Pvu5g0916 5 24354170 24354813 Pvu11g1553 11 39232906 39233771 PCT