Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1657 ATGGCGTTTCCCAACACTTGTAAACTCTCAGAATTTTCTTTTTCATCACTCAACCCTCCTCCTCCTTCTCGCTCTTTCCACAAATTCCCATTTCGCACACTCACCTTTGCTTCTCTCCCAACCCCTAAACCTAACGCCTCTGCACCCTGGCTTACCAAATCCCCCTCTCCCAAAAGGGTCACCGAACCCCTCACTGTCGACGACCCAATTCACCGCACAACCCCAAAACAACCGCAGAACGCCGTCGAGAGAATCGTCCTTCGGTTACGCAACTTGGGTCTGATTGAAGAAGAAGAAGAAGACGAAAAACCAGAACAAAAGGAAGAATTGCCGGCTAGTAATCCGGCGCCGGTGACCGGAGATGAGAGGCTGAGCGAGTTGCTCCGGCGGGACTGGGGAAGGCCGGACGCCGGGCTGGTGGGCGAGGATGAGGAGGAGGAGATGATGCTGCCGTGGGAGAGGGAGGAGGAGAAGGTTGTGGTGGTTAGGAGTGGAAGAGATGAAGAAGGGTTGAAGACGAGGAGGCTTACGGCTCCTAGTTTGGCCGATTTGACCCTTGAGGATGAGTTGCTGAGGAGGTTGAGGAGAGAGGGGATGCGTGTGAGGGAGAGGGTGAGTGTCCCCAAGGCTGGACTCACTGAGGAGGTGATGGAGAAGATTCATAAGAGGTGGATGAAGGAGGAATTGGTGAGACTCAAGTTTCATGAGGAACTTGCAAAGGATATGAGGAAGGCTCATGAGATTGTTGAGCGTCGAACTGGCGGATTGGTCACATGGAGGGCAGGGAGTGTTATGATGGTGTATCGTGGTATTGATTACCAAGGGCCTGACTCAAGGAAGGAAGTTAATGACAAGAAAGGTAATGACTTTTTTGTGCCTGATGTCTCATCAGGAAGTTTGTTGAAAAGTGAAGTCAGTAATGCAGCCACATCTCGGGGAAAAAGTGAGGTGGTTGTGAGGGAGCAAGAACAGTCTAAGAATGTCACTGAGGCAGAAAGAGAGTACAATGCACTTCTTGATGAATTAGGTCCCCGTTTTGTTGGATGGTGGGGTACGGGGATACTCCCTGTTGATGCTGATTTACTTCCAAAAACAGTTCCAGGTTACAAAACACCGTTTAGGCTTCTTCCTACAGGAATGCGTTCTCGGCTGACTAGTGCAGAGATGACCAATTTAAGGAAACTTGCAAAATCAATTCCTTGTCATTTTGCCTTAGGGAGAAATAGAAATCACCAAGGTCTAGCATGTGCTATTCTTAAGCTTTGGGAGAAAAGTTTAGTTGCAAAGATTGCTGTCAAACCTGGCATCCAAAACACAAACAATGAACTGATGTCTGAGGAGCTGAAGATGTTAACAGGAGGTACCTTGCTGCTAAGGAATAAATATTTCATTGTTATATACCGTGGGAAAGACTTCGTTCCAATAAATGTGGCTGCTGTTTTAGCTGAAAGAGAGGAAATGACAAAGCAAGTGCAGGATGTTGAAGACAAGTTACGGTACAGAGCAGTGAATGCAATTCCATCAGGGCAAGGTGAAGCAACAGCACAGGCTGGGACTTTAGCAGAGTTCTATGAGGCCCAGGCTCGATGGGGGAGGGAAATATCTCCTGGAGAACGTGAGAAGATGCTGGAAGAAGCTGCCAAAGCCAAGACTGCTAAACTTGTCAGAAAAATTGAACATAAACTATTTATAGCCCAGACCAAAAAGCATAGAGCAGAAAAGCTCTTAGCTAAAATAGAATCATCGATGGTTCCAGCTGGTCCTGATTATGACCAGGAAACAATCACAGATGAAGAACGTGTTATGTTCCGTAAAGTTGGTTTAAGAATGAAACCATACTTACCACTTGGTATACGTGGTGTTTTTGATGGTGTCGTCGAGAATATGCATTTGCATTGGAAACACCGAGAACTTGTAAAATTGATGACAAAACAAAAGACTCTTGCTTTTGTGGAAGACACAGCAAGGTTACTTGAATATGAGAGTGGTGGAATACTGGTTGCAATAGAAAAAGTTTCCAAAGAATTTGCTCTTATTTACTATCGTGGAAAGAATTATAAACGCCCAATTAATCTGAGGCCAAGAAACCTTCTAACGAAGGGAAAGGCATTAAAGCGACATGTAGCCATGCAACGTCACGAGGCTCTGAGTCAGCATATTACTGAACTGGAAAAGACTATAGAAGAATTGAAAAAAGAACTTGATAAGCCTCAAGATTTGAATGATGAAGATGGGTCGAGCTCAGAGGAAGAGGATCATAACCAAATAGACAACATCTCAGAATTGACCCTTAGTGAGAATGAAGATTCGGATGGTTTTGATGACGAGGACAAAAGCAACTGGTTAGATGATGAGGAAGAAAGTGATTGGGAAGATGATGAGGACCTGAGTTTTCAAAATTCGTAA 2406 0.4526 MAFPNTCKLSEFSFSSLNPPPPSRSFHKFPFRTLTFASLPTPKPNASAPWLTKSPSPKRVTEPLTVDDPIHRTTPKQPQNAVERIVLRLRNLGLIEEEEEDEKPEQKEELPASNPAPVTGDERLSELLRRDWGRPDAGLVGEDEEEEMMLPWEREEEKVVVVRSGRDEEGLKTRRLTAPSLADLTLEDELLRRLRREGMRVRERVSVPKAGLTEEVMEKIHKRWMKEELVRLKFHEELAKDMRKAHEIVERRTGGLVTWRAGSVMMVYRGIDYQGPDSRKEVNDKKGNDFFVPDVSSGSLLKSEVSNAATSRGKSEVVVREQEQSKNVTEAEREYNALLDELGPRFVGWWGTGILPVDADLLPKTVPGYKTPFRLLPTGMRSRLTSAEMTNLRKLAKSIPCHFALGRNRNHQGLACAILKLWEKSLVAKIAVKPGIQNTNNELMSEELKMLTGGTLLLRNKYFIVIYRGKDFVPINVAAVLAEREEMTKQVQDVEDKLRYRAVNAIPSGQGEATAQAGTLAEFYEAQARWGREISPGEREKMLEEAAKAKTAKLVRKIEHKLFIAQTKKHRAEKLLAKIESSMVPAGPDYDQETITDEERVMFRKVGLRMKPYLPLGIRGVFDGVVENMHLHWKHRELVKLMTKQKTLAFVEDTARLLEYESGGILVAIEKVSKEFALIYYRGKNYKRPINLRPRNLLTKGKALKRHVAMQRHEALSQHITELEKTIEELKKELDKPQDLNDEDGSSSEEEDHNQIDNISELTLSENEDSDGFDDEDKSNWLDDEEESDWEDDEDLSFQNS* 802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1657 801 Pfam CRS1 / YhbY (CRM) domain 596 671 IPR001890 GO:0003723
Pvu4g1657 801 Pfam CRS1 / YhbY (CRM) domain 384 468 IPR001890 GO:0003723
Pvu4g1657 801 Pfam CRS1 / YhbY (CRM) domain 187 269 IPR001890 GO:0003723
Pvu4g1657 801 MobiDBLite consensus disorder prediction 40 78 - -
Pvu4g1657 801 Gene3D - 595 699 IPR035920 -
Pvu4g1657 801 PANTHER CRS1 / YHBY (CRM) DOMAIN-CONTAINING PROTEIN 41 798 IPR045278 GO:0000375|GO:0003729
Pvu4g1657 801 MobiDBLite consensus disorder prediction 733 801 - -
Pvu4g1657 801 ProSiteProfiles CRM domain profile. 593 693 IPR001890 GO:0003723
Pvu4g1657 801 ProSiteProfiles CRM domain profile. 382 479 IPR001890 GO:0003723
Pvu4g1657 801 MobiDBLite consensus disorder prediction 40 54 - -
Pvu4g1657 801 Coils Coil 477 497 - -
Pvu4g1657 801 PANTHER CRS1 / YHBY (CRM) DOMAIN-CONTAINING PROTEIN 41 798 - -
Pvu4g1657 801 MobiDBLite consensus disorder prediction 767 801 - -
Pvu4g1657 801 Gene3D - 383 479 IPR035920 -
Pvu4g1657 801 Gene3D - 184 285 IPR035920 -
Pvu4g1657 801 SUPERFAMILY YhbY-like 384 475 IPR035920 -
Pvu4g1657 801 Coils Coil 232 252 - -
Pvu4g1657 801 SMART CRS1_YhbY_2 384 468 IPR001890 GO:0003723
Pvu4g1657 801 SMART CRS1_YhbY_2 186 269 IPR001890 GO:0003723
Pvu4g1657 801 SMART CRS1_YhbY_2 595 682 IPR001890 GO:0003723
Pvu4g1657 801 Coils Coil 321 341 - -
Pvu4g1657 801 ProSiteProfiles CRM domain profile. 184 280 IPR001890 GO:0003723
Pvu4g1657 801 SUPERFAMILY YhbY-like 185 275 IPR035920 -
Pvu4g1657 801 Coils Coil 713 740 - -
Pvu4g1657 801 MobiDBLite consensus disorder prediction 96 121 - -
Pvu4g1657 801 SUPERFAMILY YhbY-like 594 692 IPR035920 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1657 Pvu-Chr4 43862415 43868629 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1657 - - gmx:100788177 1205.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu4g1657 4 43862415 43868629 Pvu4g1657 4 43862415 43868629 ECH
Pvu2g3258 2 47715426 47720359 Pvu4g1657 4 43862415 43868629 PCT