Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1656 ATGAGCTTGAAGAAAAGGGTCCTTTCAATTAACATTGAAGAGGCTGCTGTGGACTTTTTCAACCATCTCTTGCAGGAGAAGCCCAGAATTCCGGTTTTCATTCCTCTGATTCTGATTGCTTGGGCTGTTGAGAGATGGCTCTTCTCTGCCTCCTCTTGGGTTCCTCTTGCTCTTGCTGTGTGGACTACTATACAGTATGGGAGATACCAACGCAAACTACTTGTGGAGGACTTGGATAAGAAATGGAAGAGGATCATACTGAATGTCTCGCCCATCACACCATTGGAGCATTGTGAGTGGTTGAACAAGTTGTTGACAGAAGTCTGGTCCAACTATTTTAATGCCAAGTTTTCAATAAGGCTTTCTGCTATTGTTGAGAAACGTATAAAGCTCCGGAAACCAAGACTTCTGGAACGAGTTGAGTTGCAGGAGTTTTCGCTAGGATCATGCCCTCCTAGCTTGGCTCTGAGAGGGATGCGTTGGTCAACTATTGGTGATCAGCGATTTCTGCAACTGGGTTTTGATTGGGATACAAGTGAAATGAGCATTTTATTGCTTGCTAAGCTTGCAAAGCCGTTGATTGGAACTGCTCGAATTGTGATTAACAGTCTTCATATCAAGGGTGATCTTCTTGCTACACCAATTCTAGATGGAAAAGCACTTCTATACTCATTCGTATCAACTCCTGAGGTGAGAATAGGAGTTGCCTTTGGAAGCGGCGGGAGCCAATCACTTCCTGCCACTGAATGGCCGGTTGTTTCTTCTTGGCTGGAAAAACTTTTTGCTGACACCCTGGCAAAAACCATGGTGGAACCTCGGCGACGTTGTTTCACTTTGCCTGCTGTTGATTTAAGGAAAAAAGCAGTTGGAGGCATTATATATATTAGAGTGATTTCAGCGAATAAACTTTCTGGGAGTTGCTTTAAGACATCTAGGAGGCAATCAAATGGGTCAACCAATGGTTATTCAGAGGACAATTTTGATGACAAGGATCTGGAGACATTTGTAGAAGTAGAAGTTGAGGAATTAACTAGGAGAACAGATGTCAGAATGGGTTCAACCCCCAGATGGGATGCACCATTTAATATGGTTTTACATGATAATACAGGAACTCTTCGTTTCAATCTTTATCAGAGCCATCCCAACAATGTGAGGTGTGACTATCTAGCAAGTTGTGAAATCAAGTTGAGGCATGTTGAAGATGATTCAACAATAATGTGGGCCGTAGGACCTGATTCTGGAGTCATTGCAAAGCAGGCACAGTTCTGTGGTGAAGAAATTGAAATGGTTGTCCCATTTGAGGGCCCCAACTCTGCAGAGTTGAAGGTGAGCATTGTAGTCAAAGAGTGGCAATTTTCTGATGGTTCGCATAGCTTGAACAGTATCCGGAGTACCAACTCTCAGCAGTCAATTAATGGATCACCAAATATTCAGTTAAAAACTGGAAGGAAAATTAGTGTAATTGTTGTGGAAGGAAAGGATCTTGCTGCAAGAGACAAATCTGGAAAATTTGACCCTTATGTCAAATTGCAGTATGGAAAGGTTGTCCAGAAATCAAGAACTGGTCATACTCCAAATCCTGTCTGGAATCAGACATTTGAATTCGATGAGATTAGTGGTGGGGAATACTTAAAAATTAAAGGCTTTTCTGAAGAAATTTTTGGCGATGAAAACATTGGTAGTGCTCATGTGAATTTGGAAGGACTGGTTGAGGGCTCAGTCAGGGATGTATGGATCCCTCTTGAAAGAGTGCGTTCTGGAGAATTAAGACTTCAGATATCGGTTCGAGTGGATGACCAAGAAGGATCGAAGAGTTTGGGTTCTGGCTCAGGCAATGGTTGGATTGAACTTGTTCTGATAGAGGGAAGGGATCTTGTTGCTGCCGATCTCAGAGGCACAAGTGATCCATATGTGAGGGTACACTACGGAAGCTTTAAGAAAAGGACAAAGGTCATATACAGAACTCTTAATCCTCAGTGGAACCAGACCTTAGAGTTCTCTGATGATGGAAGTCCCCTAATGCTTTATGTCAAAGATCACAATGCATTATTGCCCACATCAAGTATAGGTGAATGTGTTGTAGAATATCAAAGGTTGCCTCCAAACCAGATGGCTGACAAGTGGATACCTCTCCAAGGAGTGAAAAGGGGTGAAATTCATGTCCAAATCACTAGAAAAGTTCCAGAGTTGCAGATGAGGCAAAGTCTAGACTCTGAACCTTCCTTGAGTAAACTACACCAAATTCCAAACCAGATAAAACAGATGATGATCAAGTTCAGGTCCTTCATAGAGGATGGAAATCTTGAAGGACTCTCTACAACATTGAGTGAGCTAGAAACTCTTGAGGATACACAGGAAGGGTATATATCTCAGCTGGAGACTGAACAAATGCTTCTTCTCAGCAAAATAAAGGAACTTGGCCAAGAGATCATTAATTCTTCTCCTTCCCTCAGCAGAAGATCTTCTTCAGCTGGAAACTGA 2481 0.424 MSLKKRVLSINIEEAAVDFFNHLLQEKPRIPVFIPLILIAWAVERWLFSASSWVPLALAVWTTIQYGRYQRKLLVEDLDKKWKRIILNVSPITPLEHCEWLNKLLTEVWSNYFNAKFSIRLSAIVEKRIKLRKPRLLERVELQEFSLGSCPPSLALRGMRWSTIGDQRFLQLGFDWDTSEMSILLLAKLAKPLIGTARIVINSLHIKGDLLATPILDGKALLYSFVSTPEVRIGVAFGSGGSQSLPATEWPVVSSWLEKLFADTLAKTMVEPRRRCFTLPAVDLRKKAVGGIIYIRVISANKLSGSCFKTSRRQSNGSTNGYSEDNFDDKDLETFVEVEVEELTRRTDVRMGSTPRWDAPFNMVLHDNTGTLRFNLYQSHPNNVRCDYLASCEIKLRHVEDDSTIMWAVGPDSGVIAKQAQFCGEEIEMVVPFEGPNSAELKVSIVVKEWQFSDGSHSLNSIRSTNSQQSINGSPNIQLKTGRKISVIVVEGKDLAARDKSGKFDPYVKLQYGKVVQKSRTGHTPNPVWNQTFEFDEISGGEYLKIKGFSEEIFGDENIGSAHVNLEGLVEGSVRDVWIPLERVRSGELRLQISVRVDDQEGSKSLGSGSGNGWIELVLIEGRDLVAADLRGTSDPYVRVHYGSFKKRTKVIYRTLNPQWNQTLEFSDDGSPLMLYVKDHNALLPTSSIGECVVEYQRLPPNQMADKWIPLQGVKRGEIHVQITRKVPELQMRQSLDSEPSLSKLHQIPNQIKQMMIKFRSFIEDGNLEGLSTTLSELETLEDTQEGYISQLETEQMLLLSKIKELGQEIINSSPSLSRRSSSAGN* 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1656 826 Coils Coil 789 809 - -
Pvu4g1656 826 Gene3D C2 domain 290 425 IPR035892 -
Pvu4g1656 826 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 94 280 IPR031468 GO:0008289
Pvu4g1656 826 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 606 724 IPR035892 -
Pvu4g1656 826 Pfam C2 domain 484 581 IPR000008 -
Pvu4g1656 826 Pfam C2 domain 292 402 IPR000008 -
Pvu4g1656 826 Pfam C2 domain 615 711 IPR000008 -
Pvu4g1656 826 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 325 405 IPR035892 -
Pvu4g1656 826 PANTHER OS01G0128800 PROTEIN 1 819 - -
Pvu4g1656 826 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 484 594 IPR035892 -
Pvu4g1656 826 SMART C2_3c 614 708 IPR000008 -
Pvu4g1656 826 SMART C2_3c 292 408 IPR000008 -
Pvu4g1656 826 SMART C2_3c 484 578 IPR000008 -
Pvu4g1656 826 Gene3D C2 domain 597 726 IPR035892 -
Pvu4g1656 826 Gene3D C2 domain 469 596 IPR035892 -
Pvu4g1656 826 PANTHER PLANT SYNAPTOTAGMIN 1 819 - -
Pvu4g1656 826 ProSiteProfiles C2 domain profile. 463 579 IPR000008 -
Pvu4g1656 826 CDD C2 615 711 - -
Pvu4g1656 826 ProSiteProfiles C2 domain profile. 585 709 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1656 Pvu-Chr4 43852387 43860136 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1656 455 755 Lipid Metabolism Gene Families AT3G57880 24.432 6.07e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1656 - - gmx:100789237 1493.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu4g1656 4 43852387 43860136 Pvu2g3259 2 47721120 47727443 ECH
Pvu4g1656 4 43852387 43860136 Pvu4g1656 4 43852387 43860136 ECH
Pvu2g3259 2 47721120 47727443 Pvu4g1656 4 43852387 43860136 PCT