Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1201 ATGTGTCCTTCTGGGTTTTCATCATCTTCCACTGCAGAAGAAGTTACTCAAGGGATTCATGGGGATGGTCTCACTGCAATTGTCACAGGAACAACACATGGTATTGGCATTGAGACTGCAAGAGTTCTTGCTTTGCGTGGTGTCCACGTGATTATGGCAGTGAGAAATGTGGTTGCTGCAAAAGCTGTCAAAGAGGCAATACTCAAAGAGATTCACACAGCCAAAGTTGATGTCAAGGAGTTAGATCTTAGTTCAATGGCATCTGTTAGAAAATTTGCATCAGAGTTCACTTCATCTGGTTTTCCGTTGAACATCTTGATAAACAACGCAGGGATAACTGCAACCCCTTTCTCGCTGTCCAAAGACAACATCGAACTACAATTTGCCACAAATCACTTGGGTCATTTTCTTTTAACACATCTTTTATTGGATACTATGAAGAAAACTGCAAGTGTAAGCAAGAGACAAGGAAGAATTGTAAATGTCTCCTCTGATGGTCACCAATATACATATCCTGAAGGAATTCGTTTTGATAAAATTAATGATGAATCAAGTTTCCAGTTGTGGCGTGCTTATGGGCAATCAAAGCTTGCTAACATTTTACATGCCAAGGAACTTGCAAGACGTTTTAAAGAAGATAGGGTAGATATTACAGCAAATTCTCTTCATCCAGGAGCTATTATAACCAATATTTATAAGCCAGAGATTAGTGGCGCTGTGCCAACAGATTTAATTAATATGCTTGGCAATTATGCGATGAAAAGTATTCAGCAGGGAGCAGCAACAACATGCTATGTAGCGTTGCATCCACACGTGAAGGGAGTTAGTGGCGAGTACTTTTCAGATAATAATGTGGCTAAGGCAAGCTCACTGGCAAAAAACACTGATTTGGCTAAGAAACTCTGGGATTTCAGCATGAAAATAATTGATTAG 933 0.3976 MCPSGFSSSSTAEEVTQGIHGDGLTAIVTGTTHGIGIETARVLALRGVHVIMAVRNVVAAKAVKEAILKEIHTAKVDVKELDLSSMASVRKFASEFTSSGFPLNILINNAGITATPFSLSKDNIELQFATNHLGHFLLTHLLLDTMKKTASVSKRQGRIVNVSSDGHQYTYPEGIRFDKINDESSFQLWRAYGQSKLANILHAKELARRFKEDRVDITANSLHPGAIITNIYKPEISGAVPTDLINMLGNYAMKSIQQGAATTCYVALHPHVKGVSGEYFSDNNVAKASSLAKNTDLAKKLWDFSMKIID* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1201 310 CDD retinol-DH_like_SDR_c_like 23 302 - -
Pvu4g1201 310 PANTHER RETINOL DEHYDROGENASE 3 310 - -
Pvu4g1201 310 Gene3D - 20 310 - -
Pvu4g1201 310 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 101 112 IPR002347 -
Pvu4g1201 310 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 165 IPR002347 -
Pvu4g1201 310 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 192 211 IPR002347 -
Pvu4g1201 310 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 23 286 IPR036291 -
Pvu4g1201 310 Pfam short chain dehydrogenase 25 173 IPR002347 -
Pvu4g1201 310 PRINTS Glucose/ribitol dehydrogenase family signature 25 42 IPR002347 -
Pvu4g1201 310 PRINTS Glucose/ribitol dehydrogenase family signature 101 112 IPR002347 -
Pvu4g1201 310 PRINTS Glucose/ribitol dehydrogenase family signature 151 167 IPR002347 -
Pvu4g1201 310 PRINTS Glucose/ribitol dehydrogenase family signature 192 211 IPR002347 -
Pvu4g1201 310 PRINTS Glucose/ribitol dehydrogenase family signature 215 232 IPR002347 -
Pvu4g1201 310 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 3 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1201 Pvu-Chr4 37170973 37179184 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1201 27 164 Acyl Lipid Metabolism Gene Families AT1G62610 31.293 1.02e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1201 - - cam:101490020 433.335
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g0741 7 6621102 6626658 Pvu4g1201 4 37170973 37179184 PCT